The study of chromatin structure and function is one of the most dynamic and
exciting fields in biology today. Check back often for summaries and discussion
of the latest breakthroughs in chromatin biology and epigenetics.

1.Polycomb-like 3 promotes polycomb repressive complex 2 binding to CpG islands and embryonic stem cell self-renewal.
Hunkapiller J, Shen Y, Diaz A, Cagney G, McCleary D, Ramalho-Santos M, Krogan N, Ren B, Song JS, Reiter JF.
PLoS Genet. 2012 Mar;8(3):e1002576. Epub 2012 Mar 15.
PMID: 22438827 [PubMed - in process]

2.Transcriptional Control in Cardiac Progenitors: Tbx1 Interacts with the BAF Chromatin Remodeling Complex and Regulates Wnt5a.
Chen L, Fulcoli FG, Ferrentino R, Martucciello S, Illingworth EA, Baldini A.
PLoS Genet. 2012 Mar;8(3):e1002571. Epub 2012 Mar 15.
PMID: 22438823 [PubMed - in process]

3.Autoregulation of the Drosophila Noncoding roX1 RNA Gene.
Lim CK, Kelley RL.
PLoS Genet. 2012 Mar;8(3):e1002564. Epub 2012 Mar 15.
PMID: 22438819 [PubMed - in process]

4.An Alu Element-Associated Hypermethylation Variant of the POMC Gene Is Associated with Childhood Obesity.
Kuehnen P, Mischke M, Wiegand S, Sers C, Horsthemke B, Lau S, Keil T, Lee YA, Grueters A, Krude H.
PLoS Genet. 2012 Mar;8(3):e1002543. Epub 2012 Mar 15.
PMID: 22438814 [PubMed - in process]

5.Gcn5p-dependent acetylation induces degradation of the meiotic transcriptional repressor Ume6p.
Mallory MJ, Law MJ, Sterner DE, Berger SL, Strich R.
Mol Biol Cell. 2012 Mar 21. [Epub ahead of print]
PMID: 22438583 [PubMed - as supplied by publisher]

6.Genome-Wide Analysis of DNA Methylation and Gene Expression Changes in Two Arabidopsis Ecotypes and Their Reciprocal Hybrids.
Shen H, He H, Li J, Chen W, Wang X, Guo L, Peng Z, He G, Zhong S, Qi Y, Terzaghi W, Deng XW.
Plant Cell. 2012 Mar 20. [Epub ahead of print]
PMID: 22438023 [PubMed - as supplied by publisher]

7.The RNA-binding landscapes of two SR proteins reveal unique functions and binding to diverse RNA classes.
Anko ML, Muller-McNicoll M, Brandl H, Curk T, Gorup C, Henry I, Ule J, Neugebauer KM.
Genome Biol. 2012 Mar 21;13(3):R17. [Epub ahead of print]
PMID: 22436691 [PubMed - as supplied by publisher]

8.Chromatin-targeting small molecules cause class-specific transcriptional changes in pancreatic endocrine cells.
Kubicek S, Gilbert JC, Fomina-Yadlin D, Gitlin AD, Yuan Y, Wagner FF, Holson EB, Luo T, Lewis TA, Taylor B, Gupta S, Shamji AF, Wagner BK, Clemons PA, Schreiber SL.
Proc Natl Acad Sci U S A. 2012 Mar 20. [Epub ahead of print]
PMID: 22434908 [PubMed - as supplied by publisher]

9.The HTLV-1-encoded protein HBZ directly inhibits the acetyl transferase activity of p300/CBP.
Wurm T, Wright DG, Polakowski N, Mesnard JM, Lemasson I.
Nucleic Acids Res. 2012 Mar 19. [Epub ahead of print]
PMID: 22434882 [PubMed - as supplied by publisher]

10.Deregulation of the DNA damage response pathway by intercellular contact.
Ausman Kang M, So EY, Ouchi T.
J Biol Chem. 2012 Mar 19. [Epub ahead of print]
PMID: 22431734 [PubMed - as supplied by publisher] Free Article

11.Yeast Swd2 is essential due to antagonism between the Set1 histone methyltransferase complex and the Associated with Pta1 (APT) termination factor.
Soares LM, Buratowski S.
J Biol Chem. 2012 Mar 19. [Epub ahead of print]
PMID: 22431730 [PubMed - as supplied by publisher] Free Article

12.Profiles of epigenetic histone post-translational modifications at type 1 diabetes susceptible genes.
Miao F, Chen Z, Zhang L, Liu Z, Wu X, Yuan YC, Natarajan R.
J Biol Chem. 2012 Mar 19. [Epub ahead of print]
PMID: 22431725 [PubMed - as supplied by publisher] Free Article

13.Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana.
Stroud H, Otero S, Desvoyes B, Ramírez-Parra E, Jacobsen SE, Gutierrez C.
Proc Natl Acad Sci U S A. 2012 Mar 19. [Epub ahead of print]
PMID: 22431625 [PubMed - as supplied by publisher]

14.RNAi keeps Atf1-bound stress response genes in check at nuclear pores.
Woolcock KJ, Stunnenberg R, Gaidatzis D, Hotz HR, Emmerth S, Barraud P, Bühler M.
Genes Dev. 2012 Mar 19. [Epub ahead of print]
PMID: 22431512 [PubMed - as supplied by publisher]

15.Centromere-targeted de novo integrations of an LTR retrotransposon of Arabidopsis lyrata.
Tsukahara S, Kawabe A, Kobayashi A, Ito T, Aizu T, Shin-I T, Toyoda A, Fujiyama A, Tarutani Y, Kakutani T.
Genes Dev. 2012 Mar 19. [Epub ahead of print]
PMID: 22431508 [PubMed - as supplied by publisher]

16.DNA methylation pattern of the SLC25A43 gene in breast cancer.
Lindqvist BM, Farkas SA, Wingren S, Nilsson TK.
Epigenetics. 2012 Mar 1;7(3):300-6.
PMID: 22430806 [PubMed - in process]

17.Peripheral blood DNA methylation profiles are indicative of head and neck squamous cell carcinoma: An epigenome-wide association study.
Langevin SM, Koestler DC, Christensen BC, Butler RA, Wiencke JK, Nelson HH, Houseman EA, Marsit CJ, Kelsey KT.
Epigenetics. 2012 Mar 1;7(3):291-9.
PMID: 22430805 [PubMed - in process]

18.DNA methylation changes associated with risk factors in tumors of the upper aerodigestive tract.
Mani S, Szymańska K, Cuenin C, Zaridze D, Balassiano K, Lima SC, Matos E, Daudt A, Koifman S, Filho VW, Menezes AM, Curado MP, Ferro G, Vaissière T, Sylla BS, Tommasino M, Pinto LF, Boffetta P, Hainaut P, Brennan P, Herceg Z.
Epigenetics. 2012 Mar 1;7(3):270-7.
PMID: 22430803 [PubMed - in process]

19.Gene promoter methylation is associated with lung function in the elderly: The Normative Aging Study.
Lepeule J, Baccarelli A, Motta V, Cantone L, Litonjua AA, Sparrow D, Vokonas PS, Schwartz J.
Epigenetics. 2012 Mar 1;7(3):261-9.
PMID: 22430802 [PubMed - in process]

20.Gestational intake of methyl donors and global LINE-1 DNA methylation in maternal and cord blood: Prospective results from a folate-replete population.
Boeke CE, Baccarelli A, Kleinman KP, Burris HH, Litonjua AA, Rifas-Shiman SL, Tarantini L, Gillman M.
Epigenetics. 2012 Mar 1;7(3):253-60.
PMID: 22430801 [PubMed - in process]

21.Maternal dietary protein restriction and excess affects offspring gene expression and methylation of non-SMC subunits of condensin I in liver and skeletal muscle.
Altmann S, Murani E, Schwerin M, Metges CC, Wimmers K, Ponsuksili S.
Epigenetics. 2012 Mar 1;7(3):239-52.
PMID: 22430800 [PubMed - in process]

22.MethLAB: A graphical user interface package for the analysis of array-based DNA methylation data.
Kilaru V, Barfield RT, Schroeder JW, Smith AK, Conneely KN.
Epigenetics. 2012 Mar 1;7(3):225-9.
PMID: 22430798 [PubMed - in process]

23.Increased DNA methyltransferase activity and DNA methylation following Epidermal Growth Factor stimulation in ovarian cancer cells.
Samudio-Ruiz SL, Hudson LG.
Epigenetics. 2012 Mar 1;7(3):216-24.
PMID: 22430797 [PubMed - in process]

24.Nuclear factor of activated T cells 1 (NFAT1) induced permissive chromatin modification facilitates nuclear Factor-κB (NF-κB) mediated interleukin-9 (IL-9) transactivation.
Jash A, Sahoo A, Kim GC, Chae CS, Hwang JS, Kim JE, Im SH.
J Biol Chem. 2012 Mar 15. [Epub ahead of print]
PMID: 22427656 [PubMed - as supplied by publisher] Free Article

25.Leucine-rich repeat and WD repeat-containing protein 1 is recruited to pericentric heterochromatin by trimethylated lysine 9 of histone H3 and maintains heterochromatin silencing.
Chan KM, Zhang Z.
J Biol Chem. 2012 Mar 15. [Epub ahead of print]
PMID: 22427655 [PubMed - as supplied by publisher] Free Article

26.The nonhistone, N-terminal tail of an essential, chimeric H2A variant regulates mitotic H3-S10 dephosphorylation.
Song X, Bowen J, Miao W, Liu Y, Gorovsky MA.
Genes Dev. 2012 Mar 15;26(6):615-29.
PMID: 22426537 [PubMed - in process]

27.Identification and characterization of ToRC, a novel ISWI-containing ATP-dependent chromatin assembly complex.
Emelyanov AV, Vershilova E, Ignatyeva MA, Pokrovsky DK, Lu X, Konev AY, Fyodorov DV.
Genes Dev. 2012 Mar 15;26(6):603-14.
PMID: 22426536 [PubMed - in process]

28.ATAC-king the complexity of SAGA during evolution.
Spedale G, Timmers HT, Pijnappel WW.
Genes Dev. 2012 Mar 15;26(6):527-41.
PMID: 22426530 [PubMed - in process]

29.Regulated noise in the epigenetic landscape of development and disease.
Pujadas E, Feinberg AP.
Cell. 2012 Mar 16;148(6):1123-31.
PMID: 22424224 [PubMed - in process]

30.Acetylation: A Novel Link between Double-Strand Break Repair and Autophagy.
Shubassi G, Robert T, Vanoli F, Minucci S, Foiani M.
Cancer Res. 2012 Mar 15;72(6):1332-5.
PMID: 22422989 [PubMed - in process]

31.Chromatin remodeling underlies the senescence-associated secretory phenotype of tumor stromal fibroblasts that supports cancer progression.
Pazolli E, Alspach E, Milczarek A, Prior J, Piwnica-Worms D, Stewart SA.
Cancer Res. 2012 Mar 15. [Epub ahead of print]
PMID: 22422937 [PubMed - as supplied by publisher]

32.Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb.
Cotney J, Leng J, Oh S, Demare LE, Reilly SK, Gerstein MB, Noonan JP.
Genome Res. 2012 Mar 15. [Epub ahead of print]
PMID: 22421546 [PubMed - as supplied by publisher]

33.H2B monoubiquitylation is a 5′-enriched active transcription mark and correlates with exon-intron structure in human cells.
Jung I, Kim SK, Kim M, Han YM, Kim YS, Kim D, Lee D.
Genome Res. 2012 Mar 15. [Epub ahead of print]
PMID: 22421545 [PubMed - as supplied by publisher]

34.Forced binding of the origin of replication complex to chromosomal sites in Drosophila S2 cells creates an origin of replication.
Crevel G, Cotterill S.
J Cell Sci. 2012 Mar 15. [Epub ahead of print]
PMID: 22421364 [PubMed - as supplied by publisher]

35.The MOF Chromobarrel Domain Controls Genome-wide H4K16 Acetylation and Spreading of the MSL Complex.
Conrad T, Cavalli FM, Holz H, Hallacli E, Kind J, Ilik I, Vaquerizas JM, Luscombe NM, Akhtar A.
Dev Cell. 2012 Mar 13;22(3):610-24.
PMID: 22421046 [PubMed - in process]

36.Functional dissection of lysine deacetylases reveals that HDAC1 and p300 regulate AMPK.
Lin YY, Kiihl S, Suhail Y, Liu SY, Chou YH, Kuang Z, Lu JY, Khor CN, Lin CL, Bader JS, Irizarry R, Boeke JD.
Nature. 2012 Feb 8;482(7384):251-5. doi: 10.1038/nature10804.
PMID: 22318606 [PubMed - indexed for MEDLINE]

37.CENP-T-W-S-X forms a unique centromeric chromatin structure with a histone-like fold.
Nishino T, Takeuchi K, Gascoigne KE, Suzuki A, Hori T, Oyama T, Morikawa K, Cheeseman IM, Fukagawa T.
Cell. 2012 Feb 3;148(3):487-501.
PMID: 22304917 [PubMed - indexed for MEDLINE]

38.Enhancer decommissioning by LSD1 during embryonic stem cell differentiation.
Whyte WA, Bilodeau S, Orlando DA, Hoke HA, Frampton GM, Foster CT, Cowley SM, Young RA.
Nature. 2012 Feb 1;482(7384):221-5. doi: 10.1038/nature10805.
PMID: 22297846 [PubMed - indexed for MEDLINE]

39.Driver mutations in histone H3.3 and chromatin remodelling genes in paediatric glioblastoma.
Schwartzentruber J, Korshunov A, Liu XY, Jones DT, Pfaff E, Jacob K, Sturm D, Fontebasso AM, Quang DA, Tönjes M, Hovestadt V, Albrecht S, Kool M, Nantel A, Konermann C, Lindroth A, Jäger N, Rausch T, Ryzhova M, Korbel JO, Hielscher T, Hauser P, Garami M, Klekner A, Bognar L, Ebinger M, Schuhmann MU, Scheurlen W, Pekrun A, Frühwald MC, Roggendorf W, Kramm C, Dürken M, Atkinson J, Lepage P, Montpetit A, Zakrzewska M, Zakrzewski K, Liberski PP, Dong Z, Siegel P, Kulozik AE, Zapatka M, Guha A, Malkin D, Felsberg J, Reifenberger G, von Deimling A, Ichimura K, Collins VP, Witt H, Milde T, Witt O, Zhang C, Castelo-Branco P, Lichter P, Faury D, Tabori U, Plass C, Majewski J, Pfister SM, Jabado N.
Nature. 2012 Jan 29;482(7384):226-31. doi: 10.1038/nature10833.
PMID: 22286061 [PubMed - indexed for MEDLINE]

40.Connecting threads: epigenetics and metabolism.
Katada S, Imhof A, Sassone-Corsi P.
Cell. 2012 Jan 20;148(1-2):24-8.
PMID: 22265398 [PubMed - indexed for MEDLINE]

41.DNA methylation of the gonadal aromatase (cyp19a) promoter is involved in temperature-dependent sex ratio shifts in the European sea bass.
Navarro-Martín L, Viñas J, Ribas L, Díaz N, Gutiérrez A, Di Croce L, Piferrer F.
PLoS Genet. 2011 Dec;7(12):e1002447. Epub 2011 Dec 29.
PMID: 22242011 [PubMed - indexed for MEDLINE] Free PMC Article

42.The RNA silencing enzyme RNA polymerase v is required for plant immunity.
López A, Ramírez V, García-Andrade J, Flors V, Vera P.
PLoS Genet. 2011 Dec;7(12):e1002434. Epub 2011 Dec 29.
PMID: 22242006 [PubMed - indexed for MEDLINE] Free PMC Article

43.Substitutions in the amino-terminal tail of neurospora histone H3 have varied effects on DNA methylation.
Adhvaryu KK, Berge E, Tamaru H, Freitag M, Selker EU.
PLoS Genet. 2011 Dec;7(12):e1002423. Epub 2011 Dec 29.
PMID: 22242002 [PubMed - indexed for MEDLINE] Free PMC Article

44.Transcription is required to establish maternal imprinting at the Prader-Willi syndrome and Angelman syndrome locus.
Smith EY, Futtner CR, Chamberlain SJ, Johnstone KA, Resnick JL.
PLoS Genet. 2011 Dec;7(12):e1002422. Epub 2011 Dec 29.
PMID: 22242001 [PubMed - indexed for MEDLINE] Free PMC Article

45.Chromodomains read the arginine code of post-translational targeting.
Holdermann I, Meyer NH, Round A, Wild K, Sattler M, Sinning I.
Nat Struct Mol Biol. 2012 Jan 8;19(2):260-3. doi: 10.1038/nsmb.2196.
PMID: 22231402 [PubMed - indexed for MEDLINE]

46.Symmetric dimethylation of H3R2 is a newly identified histone mark that supports euchromatin maintenance.
Migliori V, Müller J, Phalke S, Low D, Bezzi M, Mok WC, Sahu SK, Gunaratne J, Capasso P, Bassi C, Cecatiello V, De Marco A, Blackstock W, Kuznetsov V, Amati B, Mapelli M, Guccione E.
Nat Struct Mol Biol. 2012 Jan 8;19(2):136-44. doi: 10.1038/nsmb.2209.
PMID: 22231400 [PubMed - indexed for MEDLINE]

47.Analysis of sirtuin 1 expression reveals a molecular explanation of IL-2-mediated reversal of T-cell tolerance.
Gao B, Kong Q, Kemp K, Zhao YS, Fang D.
Proc Natl Acad Sci U S A. 2012 Jan 17;109(3):899-904. Epub 2012 Jan 4.
PMID: 22219356 [PubMed - indexed for MEDLINE]

48.Histone H3K9 trimethylase Eggless controls germline stem cell maintenance and differentiation.
Wang X, Pan L, Wang S, Zhou J, McDowell W, Park J, Haug J, Staehling K, Tang H, Xie T.
PLoS Genet. 2011 Dec;7(12):e1002426. Epub 2011 Dec 22.
PMID: 22216012 [PubMed - indexed for MEDLINE] Free PMC Article

49.Lysine methyltransferase G9a methylates the transcription factor MyoD and regulates skeletal muscle differentiation.
Ling BM, Bharathy N, Chung TK, Kok WK, Li S, Tan YH, Rao VK, Gopinadhan S, Sartorelli V, Walsh MJ, Taneja R.
Proc Natl Acad Sci U S A. 2012 Jan 17;109(3):841-6. Epub 2012 Jan 3.
PMID: 22215600 [PubMed - indexed for MEDLINE]

50.Bivalent recognition of nucleosomes by the tandem PHD fingers of the CHD4 ATPase is required for CHD4-mediated repression.
Musselman CA, Ramírez J, Sims JK, Mansfield RE, Oliver SS, Denu JM, Mackay JP, Wade PA, Hagman J, Kutateladze TG.
Proc Natl Acad Sci U S A. 2012 Jan 17;109(3):787-92. Epub 2012 Jan 3.
PMID: 22215588 [PubMed - indexed for MEDLINE]

51.Epigenetics and the environment: emerging patterns and implications.
Feil R, Fraga MF.
Nat Rev Genet. 2012 Jan 4;13(2):97-109. doi: 10.1038/nrg3142. Review.
PMID: 22215131 [PubMed - indexed for MEDLINE]

52.Two surfaces on the histone chaperone Rtt106 mediate histone binding, replication, and silencing.
Zunder RM, Antczak AJ, Berger JM, Rine J.
Proc Natl Acad Sci U S A. 2012 Jan 17;109(3):E144-53. Epub 2011 Dec 23.
PMID: 22198837 [PubMed - indexed for MEDLINE]

53.Identification of evolutionarily conserved exons as regulated targets for the splicing activator tra2β in development.
Grellscheid S, Dalgliesh C, Storbeck M, Best A, Liu Y, Jakubik M, Mende Y, Ehrmann I, Curk T, Rossbach K, Bourgeois CF, Stévenin J, Grellscheid D, Jackson MS, Wirth B, Elliott DJ.
PLoS Genet. 2011 Dec;7(12):e1002390. doi: 10.1371/journal.pgen.1002390. Epub 2011 Dec 15.
PMID: 22194695 [PubMed - indexed for MEDLINE] Free PMC Article

54.A high-resolution whole-genome map of key chromatin modifications in the adult Drosophila melanogaster.
Yin H, Sweeney S, Raha D, Snyder M, Lin H.
PLoS Genet. 2011 Dec;7(12):e1002380. doi: 10.1371/journal.pgen.1002380. Epub 2011 Dec 15.
PMID: 22194694 [PubMed - indexed for MEDLINE] Free PMC Article

55.RNA polymerase II carboxyl-terminal domain phosphorylation regulates protein stability of the Set2 methyltransferase and histone H3 di- and trimethylation at lysine 36.
Fuchs SM, Kizer KO, Braberg H, Krogan NJ, Strahl BD.
J Biol Chem. 2012 Jan 27;287(5):3249-56. Epub 2011 Dec 7.
PMID: 22157004 [PubMed - indexed for MEDLINE]

1.Hepatocyte – Stellate Cell Crosstalk in the Liver Engenders a Permissive Inflammatory Microenvironment that Drives Progression in Hepatocellular Carcinoma.
Coulouarn C, Corlu A, Glaise D, Guenon I, Thorgeirsson SS, Clément B.
Cancer Res. 2012 Mar 14. [Epub ahead of print]
PMID: 22419664 [PubMed - as supplied by publisher]

2.The evolution of African great ape subtelomeric heterochromatin and the fusion of human chromosome 2.
Ventura M, Catacchio C, Sajjadian S, Vives L, Sudmant P, Marques-Bonet T, Graves TA, Wilson RK, Eichler EE.
Genome Res. 2012 Mar 14. [Epub ahead of print]
PMID: 22419167 [PubMed - as supplied by publisher]

3.Suppression of the antiviral response by an influenza histone mimic.
Marazzi I, Ho JS, Kim J, Manicassamy B, Dewell S, Albrecht RA, Seibert CW, Schaefer U, Jeffrey KL, Prinjha RK, Lee K, García-Sastre A, Roeder RG, Tarakhovsky A.
Nature. 2012 Mar 14. doi: 10.1038/nature10892. [Epub ahead of print]
PMID: 22419161 [PubMed - as supplied by publisher]

4.Alteration of DNA demethylation dynamics by in vitro culture conditions in rabbit pre-implantation embryos.
Reis E Silva AR, Bruno C, Fleurot R, Daniel N, Archilla C, Peynot N, Lucci CM, Beaujean N, Duranthon V.
Epigenetics. 2012 May 1;7(5). [Epub ahead of print]
PMID: 22419129 [PubMed - as supplied by publisher]

5.SFRP1 CpG island methylation locus is associated with renal cell cancer susceptibility and disease recurrence.
Atschekzei F, Hennenlotter J, Jänisch S, Großhennig A, Tränkenschuh W, Waalkes S, Peters I, Dörk T, Merseburger AS, Stenzl A, Kuczyk MA, Serth J.
Epigenetics. 2012 May 1;7(5). [Epub ahead of print]
PMID: 22419128 [PubMed - as supplied by publisher]

6.Prenatal antiepileptic exposure associates with neonatal DNA methylation differences.
Smith AK, Conneely KN, Newport DJ, Kilaru V, Schroeder JW, Pennell PB, Knight BT, Cubells JF, Brennan PA.
Epigenetics. 2012 May 1;7(5). [Epub ahead of print]
PMID: 22419127 [PubMed - as supplied by publisher]

7.ABCA1 gene promoter DNA methylation is associated with HDL particle profile and coronary artery disease in familial hypercholesterolemia.
Guay SP, Brisson D, Munger J, Lamarche B, Gaudet D, Bouchard L.
Epigenetics. 2012 May 1;7(5). [Epub ahead of print]
PMID: 22419126 [PubMed - as supplied by publisher]

8.A human Polycomb isoform lacking the Pc box does not participate to PRC1 complexes but forms protein assemblies and represses transcription.
Völkel P, Le Faou P, Vandamme J, Pira D, Angrand PO.
Epigenetics. 2012 May 1;7(5). [Epub ahead of print]
PMID: 22419124 [PubMed - as supplied by publisher]

9.Histone H3K14 and H4K8 hyperacetylation is associated with Escherichia coli induced mastitis in mice.
Modak R, Das Mitra S, Krishnamoorthy P, Bhat A, Banerjee A, Gowsica BR, Bhuvana M, Dhanikachalam V, Natesan K, Shome R, Shome BR, Kundu TK.
Epigenetics. 2012 May 1;7(5). [Epub ahead of print]
PMID: 22419123 [PubMed - as supplied by publisher]

10.CD1d induction in solid tumor cells by histone deacetylase inhibitors through inhibition of HDAC1/2 and activation of Sp1.
Yang PM, Lin PJ, Chen CC.
Epigenetics. 2012 Apr 1;7(4). [Epub ahead of print]
PMID: 22419072 [PubMed - as supplied by publisher]

11.A simple method for high-throughput quantification of genome-wide DNA methylation by fluorescence polarization.
Zhao C, Xue H.
Epigenetics. 2012 Apr 1;7(4). [Epub ahead of print]
PMID: 22419070 [PubMed - as supplied by publisher]

12.Genome-wide DNA methylation studies suggest distinct DNA methylation patterns in pediatric embryonal and alveolar rhabdomyosarcomas.
Mahoney SE, Yao Z, Keyes CC, Tapscott SJ, Diede SJ.
Epigenetics. 2012 Apr 1;7(4). [Epub ahead of print]
PMID: 22419069 [PubMed - as supplied by publisher]

13.Smyd3 regulates cancer cell phenotypes and catalyzes histone H4 lysine 5 methylation.
Van Aller GS, Reynoird N, Barbash O, Huddleston M, Liu S, Zmoos AF, McDevitt P, Sinnamon R, Le B, Mas G, Annan R, Sage J, Garcia BA, Tummino PJ, Gozani O, Kruger RG.
Epigenetics. 2012 Apr 1;7(4). [Epub ahead of print]
PMID: 22419068 [PubMed - as supplied by publisher]

14.Epigenetic reprogramming of cancer cells via targeted DNA methylation.
Rivenbark AG, Stolzenburg S, Beltran AS, Yuan X, Rots M, Strahl BD, Blancafort P.
Epigenetics. 2012 Apr 1;7(4). [Epub ahead of print]
PMID: 22419067 [PubMed - as supplied by publisher]

15.Selective DNA demethylation by fusion of TDG with a sequence-specific DNA-binding domain.
Gregory DJ, Mikhaylova L, Fedulov AV.
Epigenetics. 2012 Apr 1;7(4). [Epub ahead of print]
PMID: 22419066 [PubMed - as supplied by publisher]

16.Mitochondrial regulation of epigenetics and its role in human diseases.
Minocherhomji S, Tollefsbol TO, Singh KK.
Epigenetics. 2012 Apr 1;7(4). [Epub ahead of print]
PMID: 22419065 [PubMed - as supplied by publisher]

17.DNA methylation in neonates born to women receiving psychiatric care.
Schroeder JW, Smith AK, Brennan PA, Conneely KN, Kilaru V, Knight BT, Newport DJ, Cubells JF, Stowe ZN.
Epigenetics. 2012 Apr 1;7(4). [Epub ahead of print]
PMID: 22419064 [PubMed - as supplied by publisher]

18.Neutrophil gelatinase-associated lipocalin (NGAL) expression dependent on the tumor-associated sigma-2 receptor S2RPgrmc1.
Mir SU, Jin L, Craven RJ.
J Biol Chem. 2012 Mar 14. [Epub ahead of print]
PMID: 22418433 [PubMed - as supplied by publisher]

19.The leucine zipper domain is required for the Kaposi Sarcoma-associated herpesvirus (KSHV) K-bZIP protein to interact with histone deacetylase and is important for KSHV replication.
Martinez FP, Tang Q.
J Biol Chem. 2012 Mar 13. [Epub ahead of print]
PMID: 22416134 [PubMed - as supplied by publisher]

20.DNA methylation dynamics, metabolic fluxes, gene splicing, and alternative phenotypes in honey bees.
Foret S, Kucharski R, Pellegrini M, Feng S, Jacobsen SE, Robinson GE, Maleszka R.
Proc Natl Acad Sci U S A. 2012 Mar 13. [Epub ahead of print]
PMID: 22416128 [PubMed - as supplied by publisher]

21.Transcriptional variation in the malaria parasite Plasmodium falciparum.
Rovira-Graells N, Gupta AP, Planet E, Crowley VM, Mok S, Ribas de Pouplana L, Preiser PR, Bozdech Z, Cortés A.
Genome Res. 2012 Mar 13. [Epub ahead of print]
PMID: 22415456 [PubMed - as supplied by publisher]

22.Retrotransposons as a major source of epigenetic variations in the mammalian genome.
Ekram MB, Kang K, Kim H, Kim J.
Epigenetics. 2012 Apr 1;7(4). [Epub ahead of print]
PMID: 22415164 [PubMed - as supplied by publisher]

23.Diametrically opposite methylome-transcriptome relationships in high- and low-CpG promoter genes in postmitotic neural rat tissue.
Hartung T, Zhang L, Kanwar R, Khrebtukova I, Reinhardt M, Wang C, Therneau TM, Banck MS, Schroth GP, Beutler AS.
Epigenetics. 2012 May 1;7(5). [Epub ahead of print]
PMID: 22415013 [PubMed - as supplied by publisher]

24.Repression of Germline RNAi Pathways in Somatic Cells by Retinoblastoma Pathway Chromatin Complexes.
Wu X, Shi Z, Cui M, Han M, Ruvkun G.
PLoS Genet. 2012 Mar;8(3):e1002542. Epub 2012 Mar 8.
PMID: 22412383 [PubMed - in process] Free Article

25.M phase phosphorylation of the epigenetic regulator UHRF1 regulates its physical association with the deubiquitylase USP7 and stability.
Ma H, Chen H, Guo X, Wang Z, Sowa ME, Zheng L, Hu S, Zeng P, Guo R, Diao J, Lan F, Harper JW, Shi YG, Xu Y, Shi Y.
Proc Natl Acad Sci U S A. 2012 Mar 12. [Epub ahead of print]
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26.Codanin-1, mutated in the anaemic disease CDAI, regulates Asf1 function in S-phase histone supply.
Ask K, Jasencakova Z, Menard P, Feng Y, Almouzni G, Groth A.
EMBO J. 2012 Mar 9. doi: 10.1038/emboj.2012.55. [Epub ahead of print]
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27.Drosophila melanogaster linker histone dH1 is required for transposon silencing and to preserve genome integrity.
Vujatovic O, Zaragoza K, Vaquero A, Reina O, Bernués J, Azorín F.
Nucleic Acids Res. 2012 Mar 9. [Epub ahead of print]
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28.HJURP Uses Distinct CENP-A Surfaces to Recognize and to Stabilize CENP-A/Histone H4 for Centromere Assembly.
Bassett EA, Denizio J, Barnhart-Dailey MC, Panchenko T, Sekulic N, Rogers DJ, Foltz DR, Black BE.
Dev Cell. 2012 Mar 7. [Epub ahead of print]
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29.Lysine methylation of FOXO3 regulates oxidative stress-induced neuronal cell death.
Xie Q, Hao Y, Tao L, Peng S, Rao C, Chen H, You H, Dong MQ, Yuan Z.
EMBO Rep. 2012 Mar 9. doi: 10.1038/embor.2012.25. [Epub ahead of print]
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30.HIF2α-Sp1 interaction mediates a deacetylation-dependent FVII-gene activation under hypoxic conditions in ovarian cancer cells.
Koizume S, Ito S, Miyagi E, Hirahara F, Nakamura Y, Sakuma Y, Osaka H, Takano Y, Ruf W, Miyagi Y.
Nucleic Acids Res. 2012 Mar 8. [Epub ahead of print]
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31.Smyd2 controls cytoplasmic lysine methylation of Hsp90 and myofilament organization.
Donlin LT, Andresen C, Just S, Rudensky E, Pappas CT, Kruger M, Jacobs EY, Unger A, Zieseniss A, Dobenecker MW, Voelkel T, Chait BT, Gregorio CC, Rottbauer W, Tarakhovsky A, Linke WA.
Genes Dev. 2012 Jan 15;26(2):114-9. Epub 2012 Jan 12.
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32.A role for neuronal cAMP responsive-element binding (CREB)-1 in brain responses to calorie restriction.
Fusco S, Ripoli C, Podda MV, Ranieri SC, Leone L, Toietta G, McBurney MW, Schütz G, Riccio A, Grassi C, Galeotti T, Pani G.
Proc Natl Acad Sci U S A. 2012 Jan 10;109(2):621-6. Epub 2011 Dec 21.
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33.DNA methyltransferase 3a limits the expression of interleukin-13 in T helper 2 cells and allergic airway inflammation.
Yu Q, Zhou B, Zhang Y, Nguyen ET, Du J, Glosson NL, Kaplan MH.
Proc Natl Acad Sci U S A. 2012 Jan 10;109(2):541-6. Epub 2011 Dec 21.
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34.Structural analysis of the core COMPASS family of histone H3K4 methylases from yeast to human.
Takahashi YH, Westfield GH, Oleskie AN, Trievel RC, Shilatifard A, Skiniotis G.
Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20526-31. Epub 2011 Dec 7.
PMID: 22158900 [PubMed - indexed for MEDLINE] Free PMC Article

35.Charge-based interaction conserved within histone H3 lysine 4 (H3K4) methyltransferase complexes is needed for protein stability, histone methylation, and gene expression.
Mersman DP, Du HN, Fingerman IM, South PF, Briggs SD.
J Biol Chem. 2012 Jan 20;287(4):2652-65. Epub 2011 Dec 6.
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36.Functional impact of heterogeneous nuclear ribonucleoprotein A2/B1 in smooth muscle differentiation from stem cells and embryonic arteriogenesis.
Wang G, Xiao Q, Luo Z, Ye S, Xu Q.
J Biol Chem. 2012 Jan 20;287(4):2896-906. Epub 2011 Dec 5.
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37.Conserved molecular interactions within the HBO1 acetyltransferase complexes regulate cell proliferation.
Avvakumov N, Lalonde ME, Saksouk N, Paquet E, Glass KC, Landry AJ, Doyon Y, Cayrou C, Robitaille GA, Richard DE, Yang XJ, Kutateladze TG, Côté J.
Mol Cell Biol. 2012 Feb;32(3):689-703. Epub 2011 Dec 5.
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38.A small molecule differentiation inducer increases insulin production by pancreatic β cells.
Dioum EM, Osborne JK, Goetsch S, Russell J, Schneider JW, Cobb MH.
Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20713-8. Epub 2011 Dec 5.
PMID: 22143803 [PubMed - indexed for MEDLINE]

39.Increased expression of histone demethylase JHDM1D under nutrient starvation suppresses tumor growth via down-regulating angiogenesis.
Osawa T, Muramatsu M, Wang F, Tsuchida R, Kodama T, Minami T, Shibuya M.
Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20725-9. Epub 2011 Dec 5.
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40.Sterile inflammation of endothelial cell-derived apoptotic bodies is mediated by interleukin-1α.
Berda-Haddad Y, Robert S, Salers P, Zekraoui L, Farnarier C, Dinarello CA, Dignat-George F, Kaplanski G.
Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20684-9. Epub 2011 Dec 5.
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41.Structural insights into protein arginine symmetric dimethylation by PRMT5.
Sun L, Wang M, Lv Z, Yang N, Liu Y, Bao S, Gong W, Xu RM.
Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20538-43. Epub 2011 Dec 5.
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42.Heritable epigenetic variation among maize inbreds.
Eichten SR, Swanson-Wagner RA, Schnable JC, Waters AJ, Hermanson PJ, Liu S, Yeh CT, Jia Y, Gendler K, Freeling M, Schnable PS, Vaughn MW, Springer NM.
PLoS Genet. 2011 Nov;7(11):e1002372. Epub 2011 Nov 17.
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43.Remodelers organize cellular chromatin by counteracting intrinsic histone-DNA sequence preferences in a class-specific manner.
Moshkin YM, Chalkley GE, Kan TW, Reddy BA, Ozgur Z, van Ijcken WF, Dekkers DH, Demmers JA, Travers AA, Verrijzer CP.
Mol Cell Biol. 2012 Feb;32(3):675-88. Epub 2011 Nov 28.
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44.DNA double-strand breaks induced by high NaCl occur predominantly in gene deserts.
Dmitrieva NI, Cui K, Kitchaev DA, Zhao K, Burg MB.
Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20796-801. Epub 2011 Nov 21.
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45.Protein aggregates are recruited to aggresome by histone deacetylase 6 via unanchored ubiquitin C termini.
Ouyang H, Ali YO, Ravichandran M, Dong A, Qiu W, MacKenzie F, Dhe-Paganon S, Arrowsmith CH, Zhai RG.
J Biol Chem. 2012 Jan 20;287(4):2317-27. Epub 2011 Nov 8.
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46.The human histone chaperone sNASP interacts with linker and core histones through distinct mechanisms.
Wang H, Ge Z, Walsh ST, Parthun MR.
Nucleic Acids Res. 2012 Jan;40(2):660-9. Epub 2011 Sep 29.
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47.Regulation of u-PAR gene expression by H2A.Z is modulated by the MEK-ERK/AP-1 pathway.
Chauhan S, Boyd DD.
Nucleic Acids Res. 2012 Jan;40(2):600-13. Epub 2011 Sep 21.
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48.The tail-module of yeast Mediator complex is required for telomere heterochromatin maintenance.
Peng J, Zhou JQ.
Nucleic Acids Res. 2012 Jan;40(2):581-93. Epub 2011 Sep 19.
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49.Genome-wide prediction and analysis of human chromatin boundary elements.
Wang J, Lunyak VV, Jordan IK.
Nucleic Acids Res. 2012 Jan;40(2):511-29. Epub 2011 Sep 19.
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50.Base excision repair of 8-oxoG in dinucleosomes.
Menoni H, Shukla MS, Gerson V, Dimitrov S, Angelov D.
Nucleic Acids Res. 2012 Jan;40(2):692-700. Epub 2011 Sep 19.
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51.Function and disruption of DNA methyltransferase 3a cooperative DNA binding and nucleoprotein filament formation.
Rajavelu A, Jurkowska RZ, Fritz J, Jeltsch A.
Nucleic Acids Res. 2012 Jan;40(2):569-80. Epub 2011 Sep 16.
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52.Modeling the relative relationship of transcription factor binding and histone modifications to gene expression levels in mouse embryonic stem cells.
Cheng C, Gerstein M.
Nucleic Acids Res. 2012 Jan;40(2):553-68. Epub 2011 Sep 16.
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53.Retrotransposons that maintain chromosome ends.
Pardue ML, DeBaryshe PG.
Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20317-24. Epub 2011 Aug 5.
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54.Access to DNA establishes a secondary target site bias for the yeast retrotransposon Ty5.
Baller JA, Gao J, Voytas DF.
Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20351-6. Epub 2011 Jul 25.
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1.Polycomb-like 3 promotes polycomb repressive complex 2 binding to CpG islands and embryonic stem cell self-renewal.
Hunkapiller J, Shen Y, Diaz A, Cagney G, McCleary D, Ramalho-Santos M, Krogan N, Ren B, Song JS, Reiter JF.
PLoS Genet. 2012 Mar;8(3):e1002576. Epub 2012 Mar 15.
PMID: 22438827 [PubMed - in process]

2.Transcriptional Control in Cardiac Progenitors: Tbx1 Interacts with the BAF Chromatin Remodeling Complex and Regulates Wnt5a.
Chen L, Fulcoli FG, Ferrentino R, Martucciello S, Illingworth EA, Baldini A.
PLoS Genet. 2012 Mar;8(3):e1002571. Epub 2012 Mar 15.
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3.Autoregulation of the Drosophila Noncoding roX1 RNA Gene.
Lim CK, Kelley RL.
PLoS Genet. 2012 Mar;8(3):e1002564. Epub 2012 Mar 15.
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4.An Alu Element-Associated Hypermethylation Variant of the POMC Gene Is Associated with Childhood Obesity.
Kuehnen P, Mischke M, Wiegand S, Sers C, Horsthemke B, Lau S, Keil T, Lee YA, Grueters A, Krude H.
PLoS Genet. 2012 Mar;8(3):e1002543. Epub 2012 Mar 15.
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5.Gcn5p-dependent acetylation induces degradation of the meiotic transcriptional repressor Ume6p.
Mallory MJ, Law MJ, Sterner DE, Berger SL, Strich R.
Mol Biol Cell. 2012 Mar 21. [Epub ahead of print]
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6.Genome-Wide Analysis of DNA Methylation and Gene Expression Changes in Two Arabidopsis Ecotypes and Their Reciprocal Hybrids.
Shen H, He H, Li J, Chen W, Wang X, Guo L, Peng Z, He G, Zhong S, Qi Y, Terzaghi W, Deng XW.
Plant Cell. 2012 Mar 20. [Epub ahead of print]
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7.The RNA-binding landscapes of two SR proteins reveal unique functions and binding to diverse RNA classes.
Anko ML, Muller-McNicoll M, Brandl H, Curk T, Gorup C, Henry I, Ule J, Neugebauer KM.
Genome Biol. 2012 Mar 21;13(3):R17. [Epub ahead of print]
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8.Chromatin-targeting small molecules cause class-specific transcriptional changes in pancreatic endocrine cells.
Kubicek S, Gilbert JC, Fomina-Yadlin D, Gitlin AD, Yuan Y, Wagner FF, Holson EB, Luo T, Lewis TA, Taylor B, Gupta S, Shamji AF, Wagner BK, Clemons PA, Schreiber SL.
Proc Natl Acad Sci U S A. 2012 Mar 20. [Epub ahead of print]
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9.The HTLV-1-encoded protein HBZ directly inhibits the acetyl transferase activity of p300/CBP.
Wurm T, Wright DG, Polakowski N, Mesnard JM, Lemasson I.
Nucleic Acids Res. 2012 Mar 19. [Epub ahead of print]
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10.Deregulation of the DNA damage response pathway by intercellular contact.
Ausman Kang M, So EY, Ouchi T.
J Biol Chem. 2012 Mar 19. [Epub ahead of print]
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11.Yeast Swd2 is essential due to antagonism between the Set1 histone methyltransferase complex and the Associated with Pta1 (APT) termination factor.
Soares LM, Buratowski S.
J Biol Chem. 2012 Mar 19. [Epub ahead of print]
PMID: 22431730 [PubMed - as supplied by publisher] Free Article

12.Profiles of epigenetic histone post-translational modifications at type 1 diabetes susceptible genes.
Miao F, Chen Z, Zhang L, Liu Z, Wu X, Yuan YC, Natarajan R.
J Biol Chem. 2012 Mar 19. [Epub ahead of print]
PMID: 22431725 [PubMed - as supplied by publisher] Free Article

13.Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana.
Stroud H, Otero S, Desvoyes B, Ramírez-Parra E, Jacobsen SE, Gutierrez C.
Proc Natl Acad Sci U S A. 2012 Mar 19. [Epub ahead of print]
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14.RNAi keeps Atf1-bound stress response genes in check at nuclear pores.
Woolcock KJ, Stunnenberg R, Gaidatzis D, Hotz HR, Emmerth S, Barraud P, Bühler M.
Genes Dev. 2012 Mar 19. [Epub ahead of print]
PMID: 22431512 [PubMed - as supplied by publisher]

15.Centromere-targeted de novo integrations of an LTR retrotransposon of Arabidopsis lyrata.
Tsukahara S, Kawabe A, Kobayashi A, Ito T, Aizu T, Shin-I T, Toyoda A, Fujiyama A, Tarutani Y, Kakutani T.
Genes Dev. 2012 Mar 19. [Epub ahead of print]
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16.DNA methylation pattern of the SLC25A43 gene in breast cancer.
Lindqvist BM, Farkas SA, Wingren S, Nilsson TK.
Epigenetics. 2012 Mar 1;7(3):300-6.
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17.Peripheral blood DNA methylation profiles are indicative of head and neck squamous cell carcinoma: An epigenome-wide association study.
Langevin SM, Koestler DC, Christensen BC, Butler RA, Wiencke JK, Nelson HH, Houseman EA, Marsit CJ, Kelsey KT.
Epigenetics. 2012 Mar 1;7(3):291-9.
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18.DNA methylation changes associated with risk factors in tumors of the upper aerodigestive tract.
Mani S, Szymańska K, Cuenin C, Zaridze D, Balassiano K, Lima SC, Matos E, Daudt A, Koifman S, Filho VW, Menezes AM, Curado MP, Ferro G, Vaissière T, Sylla BS, Tommasino M, Pinto LF, Boffetta P, Hainaut P, Brennan P, Herceg Z.
Epigenetics. 2012 Mar 1;7(3):270-7.
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19.Gene promoter methylation is associated with lung function in the elderly: The Normative Aging Study.
Lepeule J, Baccarelli A, Motta V, Cantone L, Litonjua AA, Sparrow D, Vokonas PS, Schwartz J.
Epigenetics. 2012 Mar 1;7(3):261-9.
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20.Gestational intake of methyl donors and global LINE-1 DNA methylation in maternal and cord blood: Prospective results from a folate-replete population.
Boeke CE, Baccarelli A, Kleinman KP, Burris HH, Litonjua AA, Rifas-Shiman SL, Tarantini L, Gillman M.
Epigenetics. 2012 Mar 1;7(3):253-60.
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21.Maternal dietary protein restriction and excess affects offspring gene expression and methylation of non-SMC subunits of condensin I in liver and skeletal muscle.
Altmann S, Murani E, Schwerin M, Metges CC, Wimmers K, Ponsuksili S.
Epigenetics. 2012 Mar 1;7(3):239-52.
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22.MethLAB: A graphical user interface package for the analysis of array-based DNA methylation data.
Kilaru V, Barfield RT, Schroeder JW, Smith AK, Conneely KN.
Epigenetics. 2012 Mar 1;7(3):225-9.
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23.Increased DNA methyltransferase activity and DNA methylation following Epidermal Growth Factor stimulation in ovarian cancer cells.
Samudio-Ruiz SL, Hudson LG.
Epigenetics. 2012 Mar 1;7(3):216-24.
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24.Nuclear factor of activated T cells 1 (NFAT1) induced permissive chromatin modification facilitates nuclear Factor-κB (NF-κB) mediated interleukin-9 (IL-9) transactivation.
Jash A, Sahoo A, Kim GC, Chae CS, Hwang JS, Kim JE, Im SH.
J Biol Chem. 2012 Mar 15. [Epub ahead of print]
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25.Leucine-rich repeat and WD repeat-containing protein 1 is recruited to pericentric heterochromatin by trimethylated lysine 9 of histone H3 and maintains heterochromatin silencing.
Chan KM, Zhang Z.
J Biol Chem. 2012 Mar 15. [Epub ahead of print]
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26.The nonhistone, N-terminal tail of an essential, chimeric H2A variant regulates mitotic H3-S10 dephosphorylation.
Song X, Bowen J, Miao W, Liu Y, Gorovsky MA.
Genes Dev. 2012 Mar 15;26(6):615-29.
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27.Identification and characterization of ToRC, a novel ISWI-containing ATP-dependent chromatin assembly complex.
Emelyanov AV, Vershilova E, Ignatyeva MA, Pokrovsky DK, Lu X, Konev AY, Fyodorov DV.
Genes Dev. 2012 Mar 15;26(6):603-14.
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28.ATAC-king the complexity of SAGA during evolution.
Spedale G, Timmers HT, Pijnappel WW.
Genes Dev. 2012 Mar 15;26(6):527-41.
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29.Regulated noise in the epigenetic landscape of development and disease.
Pujadas E, Feinberg AP.
Cell. 2012 Mar 16;148(6):1123-31.
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30.Acetylation: A Novel Link between Double-Strand Break Repair and Autophagy.
Shubassi G, Robert T, Vanoli F, Minucci S, Foiani M.
Cancer Res. 2012 Mar 15;72(6):1332-5.
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31.Chromatin remodeling underlies the senescence-associated secretory phenotype of tumor stromal fibroblasts that supports cancer progression.
Pazolli E, Alspach E, Milczarek A, Prior J, Piwnica-Worms D, Stewart SA.
Cancer Res. 2012 Mar 15. [Epub ahead of print]
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32.Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb.
Cotney J, Leng J, Oh S, Demare LE, Reilly SK, Gerstein MB, Noonan JP.
Genome Res. 2012 Mar 15. [Epub ahead of print]
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33.H2B monoubiquitylation is a 5′-enriched active transcription mark and correlates with exon-intron structure in human cells.
Jung I, Kim SK, Kim M, Han YM, Kim YS, Kim D, Lee D.
Genome Res. 2012 Mar 15. [Epub ahead of print]
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34.Forced binding of the origin of replication complex to chromosomal sites in Drosophila S2 cells creates an origin of replication.
Crevel G, Cotterill S.
J Cell Sci. 2012 Mar 15. [Epub ahead of print]
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35.The MOF Chromobarrel Domain Controls Genome-wide H4K16 Acetylation and Spreading of the MSL Complex.
Conrad T, Cavalli FM, Holz H, Hallacli E, Kind J, Ilik I, Vaquerizas JM, Luscombe NM, Akhtar A.
Dev Cell. 2012 Mar 13;22(3):610-24.
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36.Functional dissection of lysine deacetylases reveals that HDAC1 and p300 regulate AMPK.
Lin YY, Kiihl S, Suhail Y, Liu SY, Chou YH, Kuang Z, Lu JY, Khor CN, Lin CL, Bader JS, Irizarry R, Boeke JD.
Nature. 2012 Feb 8;482(7384):251-5. doi: 10.1038/nature10804.
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37.CENP-T-W-S-X forms a unique centromeric chromatin structure with a histone-like fold.
Nishino T, Takeuchi K, Gascoigne KE, Suzuki A, Hori T, Oyama T, Morikawa K, Cheeseman IM, Fukagawa T.
Cell. 2012 Feb 3;148(3):487-501.
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38.Enhancer decommissioning by LSD1 during embryonic stem cell differentiation.
Whyte WA, Bilodeau S, Orlando DA, Hoke HA, Frampton GM, Foster CT, Cowley SM, Young RA.
Nature. 2012 Feb 1;482(7384):221-5. doi: 10.1038/nature10805.
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39.Driver mutations in histone H3.3 and chromatin remodelling genes in paediatric glioblastoma.
Schwartzentruber J, Korshunov A, Liu XY, Jones DT, Pfaff E, Jacob K, Sturm D, Fontebasso AM, Quang DA, Tönjes M, Hovestadt V, Albrecht S, Kool M, Nantel A, Konermann C, Lindroth A, Jäger N, Rausch T, Ryzhova M, Korbel JO, Hielscher T, Hauser P, Garami M, Klekner A, Bognar L, Ebinger M, Schuhmann MU, Scheurlen W, Pekrun A, Frühwald MC, Roggendorf W, Kramm C, Dürken M, Atkinson J, Lepage P, Montpetit A, Zakrzewska M, Zakrzewski K, Liberski PP, Dong Z, Siegel P, Kulozik AE, Zapatka M, Guha A, Malkin D, Felsberg J, Reifenberger G, von Deimling A, Ichimura K, Collins VP, Witt H, Milde T, Witt O, Zhang C, Castelo-Branco P, Lichter P, Faury D, Tabori U, Plass C, Majewski J, Pfister SM, Jabado N.
Nature. 2012 Jan 29;482(7384):226-31. doi: 10.1038/nature10833.
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40.Connecting threads: epigenetics and metabolism.
Katada S, Imhof A, Sassone-Corsi P.
Cell. 2012 Jan 20;148(1-2):24-8.
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41.DNA methylation of the gonadal aromatase (cyp19a) promoter is involved in temperature-dependent sex ratio shifts in the European sea bass.
Navarro-Martín L, Viñas J, Ribas L, Díaz N, Gutiérrez A, Di Croce L, Piferrer F.
PLoS Genet. 2011 Dec;7(12):e1002447. Epub 2011 Dec 29.
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42.The RNA silencing enzyme RNA polymerase v is required for plant immunity.
López A, Ramírez V, García-Andrade J, Flors V, Vera P.
PLoS Genet. 2011 Dec;7(12):e1002434. Epub 2011 Dec 29.
PMID: 22242006 [PubMed - indexed for MEDLINE] Free PMC Article

43.Substitutions in the amino-terminal tail of neurospora histone H3 have varied effects on DNA methylation.
Adhvaryu KK, Berge E, Tamaru H, Freitag M, Selker EU.
PLoS Genet. 2011 Dec;7(12):e1002423. Epub 2011 Dec 29.
PMID: 22242002 [PubMed - indexed for MEDLINE] Free PMC Article

44.Transcription is required to establish maternal imprinting at the Prader-Willi syndrome and Angelman syndrome locus.
Smith EY, Futtner CR, Chamberlain SJ, Johnstone KA, Resnick JL.
PLoS Genet. 2011 Dec;7(12):e1002422. Epub 2011 Dec 29.
PMID: 22242001 [PubMed - indexed for MEDLINE] Free PMC Article

45.Chromodomains read the arginine code of post-translational targeting.
Holdermann I, Meyer NH, Round A, Wild K, Sattler M, Sinning I.
Nat Struct Mol Biol. 2012 Jan 8;19(2):260-3. doi: 10.1038/nsmb.2196.
PMID: 22231402 [PubMed - indexed for MEDLINE]

46.Symmetric dimethylation of H3R2 is a newly identified histone mark that supports euchromatin maintenance.
Migliori V, Müller J, Phalke S, Low D, Bezzi M, Mok WC, Sahu SK, Gunaratne J, Capasso P, Bassi C, Cecatiello V, De Marco A, Blackstock W, Kuznetsov V, Amati B, Mapelli M, Guccione E.
Nat Struct Mol Biol. 2012 Jan 8;19(2):136-44. doi: 10.1038/nsmb.2209.
PMID: 22231400 [PubMed - indexed for MEDLINE]

47.Analysis of sirtuin 1 expression reveals a molecular explanation of IL-2-mediated reversal of T-cell tolerance.
Gao B, Kong Q, Kemp K, Zhao YS, Fang D.
Proc Natl Acad Sci U S A. 2012 Jan 17;109(3):899-904. Epub 2012 Jan 4.
PMID: 22219356 [PubMed - indexed for MEDLINE]

48.Histone H3K9 trimethylase Eggless controls germline stem cell maintenance and differentiation.
Wang X, Pan L, Wang S, Zhou J, McDowell W, Park J, Haug J, Staehling K, Tang H, Xie T.
PLoS Genet. 2011 Dec;7(12):e1002426. Epub 2011 Dec 22.
PMID: 22216012 [PubMed - indexed for MEDLINE] Free PMC Article

49.Lysine methyltransferase G9a methylates the transcription factor MyoD and regulates skeletal muscle differentiation.
Ling BM, Bharathy N, Chung TK, Kok WK, Li S, Tan YH, Rao VK, Gopinadhan S, Sartorelli V, Walsh MJ, Taneja R.
Proc Natl Acad Sci U S A. 2012 Jan 17;109(3):841-6. Epub 2012 Jan 3.
PMID: 22215600 [PubMed - indexed for MEDLINE]

50.Bivalent recognition of nucleosomes by the tandem PHD fingers of the CHD4 ATPase is required for CHD4-mediated repression.
Musselman CA, Ramírez J, Sims JK, Mansfield RE, Oliver SS, Denu JM, Mackay JP, Wade PA, Hagman J, Kutateladze TG.
Proc Natl Acad Sci U S A. 2012 Jan 17;109(3):787-92. Epub 2012 Jan 3.
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51.Epigenetics and the environment: emerging patterns and implications.
Feil R, Fraga MF.
Nat Rev Genet. 2012 Jan 4;13(2):97-109. doi: 10.1038/nrg3142. Review.
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52.Two surfaces on the histone chaperone Rtt106 mediate histone binding, replication, and silencing.
Zunder RM, Antczak AJ, Berger JM, Rine J.
Proc Natl Acad Sci U S A. 2012 Jan 17;109(3):E144-53. Epub 2011 Dec 23.
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53.Identification of evolutionarily conserved exons as regulated targets for the splicing activator tra2β in development.
Grellscheid S, Dalgliesh C, Storbeck M, Best A, Liu Y, Jakubik M, Mende Y, Ehrmann I, Curk T, Rossbach K, Bourgeois CF, Stévenin J, Grellscheid D, Jackson MS, Wirth B, Elliott DJ.
PLoS Genet. 2011 Dec;7(12):e1002390. doi: 10.1371/journal.pgen.1002390. Epub 2011 Dec 15.
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54.A high-resolution whole-genome map of key chromatin modifications in the adult Drosophila melanogaster.
Yin H, Sweeney S, Raha D, Snyder M, Lin H.
PLoS Genet. 2011 Dec;7(12):e1002380. doi: 10.1371/journal.pgen.1002380. Epub 2011 Dec 15.
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55.RNA polymerase II carboxyl-terminal domain phosphorylation regulates protein stability of the Set2 methyltransferase and histone H3 di- and trimethylation at lysine 36.
Fuchs SM, Kizer KO, Braberg H, Krogan NJ, Strahl BD.
J Biol Chem. 2012 Jan 27;287(5):3249-56. Epub 2011 Dec 7.
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1.The role of N-terminus of Plasmodium falciparum ORC1 in telomeric localization and var gene silencing.
Deshmukh AS, Srivastava S, Herrmann S, Gupta A, Mitra P, Gilberger TW, Dhar SK.
Nucleic Acids Res. 2012 Feb 29. [Epub ahead of print]
PMID: 22379140 [PubMed - as supplied by publisher]

2.Transcriptional provirus silencing as a crosstalk of de novo DNA methylation and epigenomic features at the integration site.
Senigl F, Auxt M, Hejnar J.
Nucleic Acids Res. 2012 Feb 29. [Epub ahead of print]
PMID: 22379139 [PubMed - as supplied by publisher]

3.Neural stem cells exposed to BrdU lose their global DNA methylation and undergo astrocytic differentiation.
Schneider L, d’Adda di Fagagna F.
Nucleic Acids Res. 2012 Feb 29. [Epub ahead of print]
PMID: 22379135 [PubMed - as supplied by publisher]

4.Mechanisms of unphosphorylated STAT3 transcription factor binding to DNA.
Timofeeva OA, Chasovskikh S, Lonskaya I, Tarasova NI, Khavrutskii L, Tarasov SG, Zhang X, Korostyshevskiy VR, Cheema A, Zhang L, Dakshanamurthy S, Brown ML, Dritschilo A.
J Biol Chem. 2012 Feb 29. [Epub ahead of print]
PMID: 22378781 [PubMed - as supplied by publisher]

5.Role of Mediator in Regulating Pol II Elongation and Nucleosome Displacement in Saccharomyces cerevisiae.
Kremer SB, Kim S, Jeon JO, Moustafa YW, Chen A, Zhao J, Gross DS.
Genetics. 2012 Feb 29. [Epub ahead of print]
PMID: 22377631 [PubMed - as supplied by publisher]

6.Chromatin structure changes around satellite repeats on the Schistosoma mansoni female sex chromosome suggest a possible mechanism for sex chromosome emergence.
Lepesant JM, Cosseau C, Boissier J, Freitag M, Portela J, Climent D, Perrin C, Zerlotini A, Grunau C.
Genome Biol. 2012 Feb 29;13(2):R14. [Epub ahead of print]
PMID: 22377319 [PubMed - as supplied by publisher]

7.Human postmeiotic sex chromatin and its impact on sex chromosome evolution.
Sin HS, Ichijima Y, Koh E, Namiki M, Namekawa SH.
Genome Res. 2012 Feb 28. [Epub ahead of print]
PMID: 22375025 [PubMed - as supplied by publisher]

8.Kruppel-Like factor 11 differentially couples to histone acetyltransferase and histone Methyltransferase Chromatin Remodeling Pathways to Transcriptionally Regulate the Dopamine D2 Receptor in Neuronal Cells.
Seo S, Lomberk G, Mathison A, Buttar N, Podratz J, Calvo E, Iovanna J, Brimijoin S, Windebank A, Urrutia R.
J Biol Chem. 2012 Feb 28. [Epub ahead of print]
PMID: 22375010 [PubMed - as supplied by publisher]

9.JMJD5, a JmjC-domain-containing protein, negatively regulates osteoclastogenesis through facilitating NFATc1 protein degradation.
Youn MY, Yokoyama A, Fujiyama-Nakamura S, Ohtake F, Minehata KI, Yasuda H, Suzuki T, Kato S, Imai Y.
J Biol Chem. 2012 Feb 28. [Epub ahead of print]
PMID: 22375008 [PubMed - as supplied by publisher]

10.Intragenic ATM methylation in peripheral blood DNA as a biomarker of breast cancer risk.
Brennan K, Garcias-Closas M, Orr N, Fletcher O, Jones M, Ashworth A, Swerdlow A, Thorne H, Riboli E, Vineis P, Dorronsoro M, Clavel-Chapelon F, Panico S, Onland-Moret NC, Trichopoulos D, Kaaks R, Khaw KT, Brown R, Flanagan JM.
Cancer Res. 2012 Feb 28. [Epub ahead of print]
PMID: 22374981 [PubMed - as supplied by publisher]

11.Replication fork movement and methylation govern SeqA binding to the Escherichia coli chromosome.
Waldminghaus T, Weigel C, Skarstad K.
Nucleic Acids Res. 2012 Feb 28. [Epub ahead of print]
PMID: 22373925 [PubMed - as supplied by publisher]

12.RNF8- and RNF168-dependent degradation of KDM4A/JMJD2A triggers 53BP1 recruitment to DNA damage sites.
Mallette FA, Mattiroli F, Cui G, Young LC, Hendzel MJ, Mer G, Sixma TK, Richard S.
EMBO J. 2012 Feb 28. doi: 10.1038/emboj.2012.47. [Epub ahead of print]
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13.Bat3 facilitates H3K79 dimethylation by DOT1L and promotes DNA damage-induced 53BP1 foci at G1/G2 cell-cycle phases.
Wakeman TP, Wang Q, Feng J, Wang XF.
EMBO J. 2012 Feb 28. doi: 10.1038/emboj.2012.50. [Epub ahead of print]
PMID: 22373577 [PubMed - as supplied by publisher]

14.NLK positively regulates Wnt/β-catenin signalling by phosphorylating LEF1 in neural progenitor cells.
Ota S, Ishitani S, Shimizu N, Matsumoto K, Itoh M, Ishitani T.
EMBO J. 2012 Feb 28. doi: 10.1038/emboj.2012.46. [Epub ahead of print]
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15.Repressor element-1 silencing transcription factor (REST)-dependent epigenetic remodeling is critical to ischemia-induced neuronal death.
Noh KM, Hwang JY, Follenzi A, Athanasiadou R, Miyawaki T, Greally JM, Bennett MV, Zukin RS.
Proc Natl Acad Sci U S A. 2012 Feb 27. [Epub ahead of print]
PMID: 22371606 [PubMed - as supplied by publisher]

16.Primary epimutations introduced during intracytoplasmic sperm injection (ICSI) are corrected by germline-specific epigenetic reprogramming.
de Waal E, Yamazaki Y, Ingale P, Bartolomei M, Yanagimachi R, McCarrey JR.
Proc Natl Acad Sci U S A. 2012 Feb 27. [Epub ahead of print]
PMID: 22371603 [PubMed - as supplied by publisher]

17.Beta-N-acetylglucosamine (O-GlcNAc) is a novel regulator of mitosis-specific phosphorylations on histone H3.
Fong JJ, Nguyen BL, Bridger R, Medrano EE, Wells L, Pan S, Sifers RN.
J Biol Chem. 2012 Feb 27. [Epub ahead of print]
PMID: 22371497 [PubMed - as supplied by publisher]

18.The histone demethylase KDM5B collaborates with TFAP2C and Myc to repress the cell cycle inhibitor p21cip/CDKN1A.
Wong PP, Miranda F, Chan KV, Berlato C, Hurst HC, Scibetta AG.
Mol Cell Biol. 2012 Feb 27. [Epub ahead of print]
PMID: 22371483 [PubMed - as supplied by publisher]

19.Epigenetic regulation of human cis-natural antisense transcripts.
Conley AB, King Jordan I.
Nucleic Acids Res. 2012 Feb 1;40(4):1438-45.
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20.The mechanism of OTUB1-mediated inhibition of ubiquitination.
Wiener R, Zhang X, Wang T, Wolberger C.
Nature. 2012 Feb 22. doi: 10.1038/nature10911. [Epub ahead of print]
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21.Interferon regulatory factor1 transactivates the expression of human DNA polymeraseη in response to the carcinogen N-methyl-N’-nitro-N-nitrosoguanidine.
Qi H, Zhu H, Lou M, Fan Y, Liu H, Shen J, Li Z, Lv X, Shan J, Zhu L, Chin YE, Shao J.
J Biol Chem. 2012 Feb 24. [Epub ahead of print]
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22.Mouse endogenous retroviruses can trigger premature transcriptional termination at a distance.
Li J, Akagi K, Hu Y, Trivett AL, Hlynialuk CJ, Swing DA, Volfovsky N, Morgan TC, Golubeva Y, Stephens RM, Smith DE, Symer DE.
Genome Res. 2012 Feb 23. [Epub ahead of print]
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23.Bub1 Kinase and Sgo1 Modulate Pericentric Chromatin in Response to Altered Microtubule Dynamics.
Haase J, Stephens A, Verdaasdonk J, Yeh E, Bloom K.
Curr Biol. 2012 Feb 21. [Epub ahead of print]
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24.Epigenetic Silencing of Core Histone Genes by HERS in Drosophila.
Ito S, Fujiyama-Nakamura S, Kimura S, Lim J, Kamoshida Y, Shiozaki-Sato Y, Sawatsubashi S, Suzuki E, Tanabe M, Ueda T, Murata T, Kato H, Ohtake F, Fujiki R, Miki T, Kouzmenko A, Takeyama K, Kato S.
Mol Cell. 2012 Feb 24;45(4):494-504.
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25.Enzyme Inhibitor May Offer Dual Protection against Brain Disease.
Choi CQ.
PLoS Biol. 2012 Feb;10(2):e1001270. Epub 2012 Feb 21.
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26.Histone deacetylase complexes promote trinucleotide repeat expansions.
Debacker K, Frizzell A, Gleeson O, Kirkham-McCarthy L, Mertz T, Lahue RS.
PLoS Biol. 2012 Feb;10(2):e1001257. Epub 2012 Feb 21.
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27.Function of homo- and hetero-oligomers of human nucleoplasmin/nucleophosmin family proteins NPM1, NPM2 and NPM3 during sperm chromatin remodeling.
Okuwaki M, Sumi A, Hisaoka M, Saotome-Nakamura A, Akashi S, Nishimura Y, Nagata K.
Nucleic Acids Res. 2012 Feb 22. [Epub ahead of print]
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28.Nsi1 plays a significant role in the silencing of ribosomal DNA in Saccharomyces cerevisiae.
Ha CW, Sung MK, Huh WK.
Nucleic Acids Res. 2012 Feb 22. [Epub ahead of print]
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29.Dnmt3a silences hematopoietic stem cell self-renewal.
Trowbridge JJ, Orkin SH.
Nat Genet. 2011 Dec 27;44(1):13-4. doi: 10.1038/ng.1043.
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30.RNase H and multiple RNA biogenesis factors cooperate to prevent RNA:DNA hybrids from generating genome instability.
Wahba L, Amon JD, Koshland D, Vuica-Ross M.
Mol Cell. 2011 Dec 23;44(6):978-88.
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31.Dynamics of histone H3 deposition in vivo reveal a nucleosome gap-filling mechanism for H3.3 to maintain chromatin integrity.
Ray-Gallet D, Woolfe A, Vassias I, Pellentz C, Lacoste N, Puri A, Schultz DC, Pchelintsev NA, Adams PD, Jansen LE, Almouzni G.
Mol Cell. 2011 Dec 23;44(6):928-41.
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32.A specific function for the histone chaperone NASP to fine-tune a reservoir of soluble H3-H4 in the histone supply chain.
Cook AJ, Gurard-Levin ZA, Vassias I, Almouzni G.
Mol Cell. 2011 Dec 23;44(6):918-27.
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33.A chromatin-modifying function of JNK during stem cell differentiation.
Tiwari VK, Stadler MB, Wirbelauer C, Paro R, Schübeler D, Beisel C.
Nat Genet. 2011 Dec 18;44(1):94-100. doi: 10.1038/ng.1036.
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34.Mechanisms establishing TLR4-responsive activation states of inflammatory response genes.
Escoubet-Lozach L, Benner C, Kaikkonen MU, Lozach J, Heinz S, Spann NJ, Crotti A, Stender J, Ghisletti S, Reichart D, Cheng CS, Luna R, Ludka C, Sasik R, Garcia-Bassets I, Hoffmann A, Subramaniam S, Hardiman G, Rosenfeld MG, Glass CK.
PLoS Genet. 2011 Dec;7(12):e1002401. Epub 2011 Dec 8.
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35.Genomic distribution and inter-sample variation of non-CpG methylation across human cell types.
Ziller MJ, Müller F, Liao J, Zhang Y, Gu H, Bock C, Boyle P, Epstein CB, Bernstein BE, Lengauer T, Gnirke A, Meissner A.
PLoS Genet. 2011 Dec;7(12):e1002389. Epub 2011 Dec 8.
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36.DNA-binding factors shape the mouse methylome at distal regulatory regions.
Stadler MB, Murr R, Burger L, Ivanek R, Lienert F, Schöler A, Wirbelauer C, Oakeley EJ, Gaidatzis D, Tiwari VK, Schübeler D.
Nature. 2011 Dec 14;480(7378):490-5. doi: 10.1038/nature10716.
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37.p50 (NF-κB1) is an effector protein in the cytotoxic response to DNA methylation damage.
Schmitt AM, Crawley CD, Kang S, Raleigh DR, Yu X, Wahlstrom JS, Voce DJ, Darga TE, Weichselbaum RR, Yamini B.
Mol Cell. 2011 Dec 9;44(5):785-96.
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38.FOXP3 orchestrates H4K16 acetylation and H3K4 trimethylation for activation of multiple genes by recruiting MOF and causing displacement of PLU-1.
Katoh H, Qin ZS, Liu R, Wang L, Li W, Li X, Wu L, Du Z, Lyons R, Liu CG, Liu X, Dou Y, Zheng P, Liu Y.
Mol Cell. 2011 Dec 9;44(5):770-84.
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39.Genome instability and transcription elongation impairment in human cells depleted of THO/TREX.
Domínguez-Sánchez MS, Barroso S, Gómez-González B, Luna R, Aguilera A.
PLoS Genet. 2011 Dec;7(12):e1002386. Epub 2011 Dec 1.
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40.Dnmt3a is essential for hematopoietic stem cell differentiation.
Challen GA, Sun D, Jeong M, Luo M, Jelinek J, Berg JS, Bock C, Vasanthakumar A, Gu H, Xi Y, Liang S, Lu Y, Darlington GJ, Meissner A, Issa JP, Godley LA, Li W, Goodell MA.
Nat Genet. 2011 Dec 4;44(1):23-31. doi: 10.1038/ng.1009.
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41.GlcNAcylation of histone H2B facilitates its monoubiquitination.
Fujiki R, Hashiba W, Sekine H, Yokoyama A, Chikanishi T, Ito S, Imai Y, Kim J, He HH, Igarashi K, Kanno J, Ohtake F, Kitagawa H, Roeder RG, Brown M, Kato S.
Nature. 2011 Nov 27;480(7378):557-60. doi: 10.1038/nature10656.
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42.Regions of focal DNA hypermethylation and long-range hypomethylation in colorectal cancer coincide with nuclear lamina-associated domains.
Berman BP, Weisenberger DJ, Aman JF, Hinoue T, Ramjan Z, Liu Y, Noushmehr H, Lange CP, van Dijk CM, Tollenaar RA, Van Den Berg D, Laird PW.
Nat Genet. 2011 Nov 27;44(1):40-6. doi: 10.1038/ng.969.
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43.CENP-E kinesin interacts with SKAP protein to orchestrate accurate chromosome segregation in mitosis.
Huang Y, Wang W, Yao P, Wang X, Liu X, Zhuang X, Yan F, Zhou J, Du J, Ward T, Zou H, Zhang J, Fang G, Ding X, Dou Z, Yao X.
J Biol Chem. 2012 Jan 6;287(2):1500-9. Epub 2011 Nov 22.
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44.Jarid2 (Jumonji, AT rich interactive domain 2) regulates NOTCH1 expression via histone modification in the developing heart.
Mysliwiec MR, Carlson CD, Tietjen J, Hung H, Ansari AZ, Lee Y.
J Biol Chem. 2012 Jan 6;287(2):1235-41. Epub 2011 Nov 21.
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45.The histone acetyltransferase TIP60 interacts with c-Myb and inactivates its transcriptional activity in human leukemia.
Zhao H, Jin S, Gewirtz AM.
J Biol Chem. 2012 Jan 6;287(2):925-34. Epub 2011 Nov 21.
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46.Histone H3K56 acetylation, CAF1, and Rtt106 coordinate nucleosome assembly and stability of advancing replication forks.
Clemente-Ruiz M, González-Prieto R, Prado F.
PLoS Genet. 2011 Nov;7(11):e1002376. Epub 2011 Nov 10.
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47.Arabidopsis homologs of retinoblastoma-associated protein 46/48 associate with a histone deacetylase to act redundantly in chromatin silencing.
Gu X, Jiang D, Yang W, Jacob Y, Michaels SD, He Y.
PLoS Genet. 2011 Nov;7(11):e1002366. Epub 2011 Nov 10.
PMID: 22102827 [PubMed - indexed for MEDLINE] Free PMC Article

48.Distal interleukin-1β (IL-1β) response element of human matrix metalloproteinase-13 (MMP-13) binds activator protein 1 (AP-1) transcription factors and regulates gene expression.
Schmucker AC, Wright JB, Cole MD, Brinckerhoff CE.
J Biol Chem. 2012 Jan 6;287(2):1189-97. Epub 2011 Nov 18.
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49.Solution structure and molecular interactions of lamin B receptor Tudor domain.
Liokatis S, Edlich C, Soupsana K, Giannios I, Panagiotidou P, Tripsianes K, Sattler M, Georgatos SD, Politou AS.
J Biol Chem. 2012 Jan 6;287(2):1032-42. Epub 2011 Nov 3.
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50.Nucleus-localized antisense small RNAs with 5′-polyphosphate termini regulate long term transcriptional gene silencing in Entamoeba histolytica G3 strain.
Zhang H, Alramini H, Tran V, Singh U.
J Biol Chem. 2011 Dec 30;286(52):44467-79. Epub 2011 Nov 2.
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51.Type II arginine methyltransferase PRMT5 regulates gene expression of inhibitors of differentiation/DNA binding Id2 and Id4 during glial cell differentiation.
Huang J, Vogel G, Yu Z, Almazan G, Richard S.
J Biol Chem. 2011 Dec 30;286(52):44424-32. Epub 2011 Oct 31.
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52.Multifactorial origins of heart and gut defects in nipbl-deficient zebrafish, a model of Cornelia de Lange Syndrome.
Muto A, Calof AL, Lander AD, Schilling TF.
PLoS Biol. 2011 Oct;9(10):e1001181. Epub 2011 Oct 25.
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53.Genetic rearrangements can modify chromatin features at epialleles.
Foerster AM, Dinh HQ, Sedman L, Wohlrab B, Mittelsten Scheid O.
PLoS Genet. 2011 Oct;7(10):e1002331. Epub 2011 Oct 20.
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54.Global mapping of cell type-specific open chromatin by FAIRE-seq reveals the regulatory role of the NFI family in adipocyte differentiation.
Waki H, Nakamura M, Yamauchi T, Wakabayashi K, Yu J, Hirose-Yotsuya L, Take K, Sun W, Iwabu M, Okada-Iwabu M, Fujita T, Aoyama T, Tsutsumi S, Ueki K, Kodama T, Sakai J, Aburatani H, Kadowaki T.
PLoS Genet. 2011 Oct;7(10):e1002311. Epub 2011 Oct 20.
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55.Nuclear architecture: the cell biology of a laminopathy.
Brickner JH.
Curr Biol. 2011 Oct 11;21(19):R807-9.
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56.Females floated first in bubble-rafting snails.
Churchill CK, Ó Foighil D, Strong EE, Gittenberger A.
Curr Biol. 2011 Oct 11;21(19):R802-3. No abstract available.
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57.Cohesin selectively binds and regulates genes with paused RNA polymerase.
Fay A, Misulovin Z, Li J, Schaaf CA, Gause M, Gilmour DS, Dorsett D.
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58.Mobile 24 nt small RNAs direct transcriptional gene silencing in the root meristems of Arabidopsis thaliana.
Melnyk CW, Molnar A, Bassett A, Baulcombe DC.
Curr Biol. 2011 Oct 11;21(19):1678-83. Epub 2011 Sep 29.
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59.An EDMD mutation in C. elegans lamin blocks muscle-specific gene relocation and compromises muscle integrity.
Mattout A, Pike BL, Towbin BD, Bank EM, Gonzalez-Sandoval A, Stadler MB, Meister P, Gruenbaum Y, Gasser SM.
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60.An insulator loop resides between the synthetically interacting elements of the human/rat conserved breast cancer susceptibility locus MCS5A/Mcs5a.
Smits BM, Traun BD, Devries TL, Tran A, Samuelson D, Haag JD, Gould M.
Nucleic Acids Res. 2012 Jan;40(1):132-47. Epub 2011 Sep 13.
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61.A promoter DNA demethylation landscape of human hematopoietic differentiation.
Calvanese V, Fernández AF, Urdinguio RG, Suárez-Alvarez B, Mangas C, Pérez-García V, Bueno C, Montes R, Ramos-Mejía V, Martínez-Camblor P, Ferrero C, Assenov Y, Bock C, Menendez P, Carrera AC, Lopez-Larrea C, Fraga MF.
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62.Inhibition of p53 acetylation by INHAT subunit SET/TAF-Iβ represses p53 activity.
Kim JY, Lee KS, Seol JE, Yu K, Chakravarti D, Seo SB.
Nucleic Acids Res. 2012 Jan;40(1):75-87. Epub 2011 Sep 12.
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63.Epigenetic regulation by RARα maintains ligand-independent transcriptional activity.
Laursen KB, Wong PM, Gudas LJ.
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64.Genome-wide H4 K16 acetylation by SAS-I is deposited independently of transcription and histone exchange.
Heise F, Chung HR, Weber JM, Xu Z, Klein-Hitpass L, Steinmetz LM, Vingron M, Ehrenhofer-Murray AE.
Nucleic Acids Res. 2012 Jan;40(1):65-74. Epub 2011 Sep 9.
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65.Histone hypoacetylation is required to maintain late replication timing of constitutive heterochromatin.
Casas-Delucchi CS, van Bemmel JG, Haase S, Herce HD, Nowak D, Meilinger D, Stear JH, Leonhardt H, Cardoso MC.
Nucleic Acids Res. 2012 Jan;40(1):159-69. Epub 2011 Sep 8.
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66.Epigenetic QTL mapping in Brassica napus.
Long Y, Xia W, Li R, Wang J, Shao M, Feng J, King GJ, Meng J.
Genetics. 2011 Nov;189(3):1093-102. Epub 2011 Sep 2.
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67.Regulation of sororin by Cdk1-mediated phosphorylation.
Dreier MR, Bekier ME 2nd, Taylor WR.
J Cell Sci. 2011 Sep 1;124(Pt 17):2976-87.
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68.Chromosomal breaks during mitotic catastrophe trigger γH2AX-ATM-p53-mediated apoptosis.
Imreh G, Norberg HV, Imreh S, Zhivotovsky B.
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1.The Origin and Nature of Tightly Clustered BTG1 Deletions in Precursor B-Cell Acute Lymphoblastic Leukemia Support a Model of Multiclonal Evolution.
Waanders E, Scheijen B, van der Meer LT, van Reijmersdal SV, van Emst L, Kroeze Y, Sonneveld E, Hoogerbrugge PM, Geurts van Kessel A, van Leeuwen FN, Kuiper RP.
PLoS Genet. 2012 Feb;8(2):e1002533. Epub 2012 Feb 16.
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2.Molecular basis for phosphospecific recognition of histone H3 tails by Survivin paralogs at inner centromeres.
Niedzialkowska E, Wang F, Porebski PJ, Minor W, Higgins JM, Stukenberg PT.
Mol Biol Cell. 2012 Feb 22. [Epub ahead of print]
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3.Global profiling of DNA methylation erasure in mouse primordial germ cells.
Guibert S, Forné T, Weber M.
Genome Res. 2012 Feb 22. [Epub ahead of print]
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4.Overlapping functions between XLF repair protein and 53BP1 DNA damage response factor in end joining and lymphocyte development.
Liu X, Jiang W, Dubois RL, Yamamoto K, Wolner Z, Zha S.
Proc Natl Acad Sci U S A. 2012 Feb 21. [Epub ahead of print]
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5.Polycomb repressive complex 2-dependent and -independent functions of Jarid2 in transcriptional regulation in Drosophila.
Herz HM, Mohan M, Garrett AS, Miller C, Casto D, Zhang Y, Seidel C, Haug JS, Florens L, Washburn MP, Yamaguchi M, Shiekhattar R, Shilatifard A.
Mol Cell Biol. 2012 Feb 21. [Epub ahead of print]
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6.Biochemical and phosphoproteomic analysis of the helix-loop-helix protein E47.
Teachenor R, Beck K, Wright LY, Shen Z, Briggs SA, Murre C.
Mol Cell Biol. 2012 Feb 21. [Epub ahead of print]
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7.Transcriptional activity of Neural retina leucine-zipper (Nrl) is regulated by JNK and Tip60 during retina development.
Kim JW, Jang SM, Kim CH, An JH, Choi KH.
Mol Cell Biol. 2012 Feb 21. [Epub ahead of print]
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8.Transducin-like Enhancer of split-1 (TLE1) combines with Forkhead box protein G1 (FoxG1) to promote neuronal survival.
Ghosh-Dastidar S, Narayanan S, Stifani S, D’Mello SR.
J Biol Chem. 2012 Feb 21. [Epub ahead of print]
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9.Deficiency in mammalian histone H2B ubiquitin ligase Bre1 (Rnf20/Rnf40) leads to replication stress and chromosomal instability.
Chernikova SB, Razorenova OV, Higgins JP, Sishc BJ, Nicolau M, Dorth JA, Chernikova DA, Kwok S, Brooks JD, Bailey SM, Game JC, Brown JM.
Cancer Res. 2012 Feb 21. [Epub ahead of print]
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10.The Dynamics and Prognostic Potential of DNA Methylation Changes at Stem Cell Gene Loci in Women’s Cancer.
Zhuang J, Jones A, Lee SH, Ng E, Fiegl H, Zikan M, Cibula D, Sargent A, Salvesen HB, Jacobs IJ, Kitchener HC, Teschendorff AE, Widschwendter M.
PLoS Genet. 2012 Feb;8(2):e1002517. Epub 2012 Feb 9.
PMID: 22346766 [PubMed - in process] Free Article

11.Gene expression and stress response mediated by the epigenetic regulation of a transposable element small RNA.
McCue AD, Nuthikattu S, Reeder SH, Slotkin RK.
PLoS Genet. 2012 Feb;8(2):e1002474. Epub 2012 Feb 9.
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12.Chromatin and transcription in yeast.
Rando OJ, Winston F.
Genetics. 2012 Feb;190(2):351-87.
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13.Haploinsufficiency of Dnmt1 impairs leukemia stem cell function through derepression of bivalent chromatin domains.
Trowbridge JJ, Sinha AU, Zhu N, Li M, Armstrong SA, Orkin SH.
Genes Dev. 2012 Feb 15;26(4):344-9.
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14.PR-Set7 and H4K20me1: at the crossroads of genome integrity, cell cycle, chromosome condensation, and transcription.
Beck DB, Oda H, Shen SS, Reinberg D.
Genes Dev. 2012 Feb 15;26(4):325-37.
PMID: 22345514 [PubMed - in process]

15.Integrated analysis identifies a class of androgen-responsive genes regulated by short combinatorial long-range mechanism facilitated by CTCF.
Taslim C, Chen Z, Huang K, Huang TH, Wang Q, Lin S.
Nucleic Acids Res. 2012 Feb 16. [Epub ahead of print]
PMID: 22344698 [PubMed - as supplied by publisher] Free Article

16.PDGFRβ Expression and Function in Fibroblasts Derived from Pluripotent Cells is Linked to DNA Demethylation.
Hewitt KJ, Shamis Y, Knight E, Smith A, Maione A, Alt-Holland A, Sheridan SD, Haggarty SJ, Garlick JA.
J Cell Sci. 2012 Feb 17. [Epub ahead of print]
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17.Human mitotic chromosomes consist predominantly of irregularly folded nucleosome fibres without a 30-nm chromatin structure.
Nishino Y, Eltsov M, Joti Y, Ito K, Takata H, Takahashi Y, Hihara S, Frangakis AS, Imamoto N, Ishikawa T, Maeshima K.
EMBO J. 2012 Feb 17. doi: 10.1038/emboj.2012.35. [Epub ahead of print]
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18.IDH mutation impairs histone demethylation and results in a block to cell differentiation.
Lu C, Ward PS, Kapoor GS, Rohle D, Turcan S, Abdel-Wahab O, Edwards CR, Khanin R, Figueroa ME, Melnick A, Wellen KE, O’Rourke DM, Berger SL, Chan TA, Levine RL, Mellinghoff IK, Thompson CB.
Nature. 2012 Feb 15. doi: 10.1038/nature10860. [Epub ahead of print]
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19.IDH1 mutation is sufficient to establish the glioma hypermethylator phenotype.
Turcan S, Rohle D, Goenka A, Walsh LA, Fang F, Yilmaz E, Campos C, Fabius AW, Lu C, Ward PS, Thompson CB, Kaufman A, Guryanova O, Levine R, Heguy A, Viale A, Morris LG, Huse JT, Mellinghoff IK, Chan TA.
Nature. 2012 Feb 15. doi: 10.1038/nature10866. [Epub ahead of print]
PMID: 22343889 [PubMed - as supplied by publisher]

20.Methylation of H4 lysines 5, 8 and 12 by yeast Set5 calibrates chromatin stress responses.
Green EM, Mas G, Young NL, Garcia BA, Gozani O.
Nat Struct Mol Biol. 2012 Feb 19. doi: 10.1038/nsmb.2252. [Epub ahead of print]
PMID: 22343720 [PubMed - as supplied by publisher]

21.Base-Resolution Analyses of Sequence and Parent-of-Origin Dependent DNA Methylation in the Mouse Genome.
Xie W, Barr CL, Kim A, Yue F, Lee AY, Eubanks J, Dempster EL, Ren B.
Cell. 2012 Feb 17;148(4):816-31.
PMID: 22341451 [PubMed - in process]

22.Regulated clearance of histone deacetylase 3 protects independent formation of nuclear receptor corepressor complexes.
Guo C, Gow CH, Li Y, Gardner A, Khan S, Zhang J.
J Biol Chem. 2012 Feb 15. [Epub ahead of print]
PMID: 22337871 [PubMed - as supplied by publisher] Free Article

23.Histone chaperone Rtt106 promotes nucleosome formation using (H3-H4)2 tetramers.
Fazly A, Li Q, Hu Q, Mer G, Horazdovsky B, Zhang Z.
J Biol Chem. 2012 Feb 15. [Epub ahead of print]
PMID: 22337870 [PubMed - as supplied by publisher] Free Article

24.The histone deacetylase Hos2 forms an Hsp42-dependent cytoplasmic granule in quiescent yeast cells.
Liu IC, Chiu SW, Lee HY, Leu JY.
Mol Biol Cell. 2012 Feb 15. [Epub ahead of print]
PMID: 22337769 [PubMed - as supplied by publisher]

25.The genetic basis of early T-cell precursor acute lymphoblastic leukaemia.
Zhang J, Ding L, Holmfeldt L, Wu G, Heatley SL, Payne-Turner D, Easton J, Chen X, Wang J, Rusch M, Lu C, Chen SC, Wei L, Collins-Underwood JR, Ma J, Roberts KG, Pounds SB, Ulyanov A, Becksfort J, Gupta P, Huether R, Kriwacki RW, Parker M, McGoldrick DJ, Zhao D, Alford D, Espy S, Bobba KC, Song G, Pei D, Cheng C, Roberts S, Barbato MI, Campana D, Coustan-Smith E, Shurtleff SA, Raimondi SC, Kleppe M, Cools J, Shimano KA, Hermiston ML, Doulatov S, Eppert K, Laurenti E, Notta F, Dick JE, Basso G, Hunger SP, Loh ML, Devidas M, Wood B, Winter S, Dunsmore KP, Fulton RS, Fulton LL, Hong X, Harris CC, Dooling DJ, Ochoa K, Johnson KJ, Obenauer JC, Evans WE, Pui CH, Naeve CW, Ley TJ, Mardis ER, Wilson RK, Downing JR, Mullighan CG.
Nature. 2012 Jan 11;481(7380):157-63. doi: 10.1038/nature10725.
PMID: 22237106 [PubMed - indexed for MEDLINE]

26.Combinatorial patterning of chromatin regulators uncovered by genome-wide location analysis in human cells.
Ram O, Goren A, Amit I, Shoresh N, Yosef N, Ernst J, Kellis M, Gymrek M, Issner R, Coyne M, Durham T, Zhang X, Donaghey J, Epstein CB, Regev A, Bernstein BE.
Cell. 2011 Dec 23;147(7):1628-39.
PMID: 22196736 [PubMed - indexed for MEDLINE]

27.A poised chromatin platform for TGF-β access to master regulators.
Xi Q, Wang Z, Zaromytidou AI, Zhang XH, Chow-Tsang LF, Liu JX, Kim H, Barlas A, Manova-Todorova K, Kaartinen V, Studer L, Mark W, Patel DJ, Massagué J.
Cell. 2011 Dec 23;147(7):1511-24.
PMID: 22196728 [PubMed - indexed for MEDLINE]

28.Replication-coupled chromatin assembly generates a neuronal bilateral asymmetry in C. elegans.
Nakano S, Stillman B, Horvitz HR.
Cell. 2011 Dec 23;147(7):1525-36. Epub 2011 Dec 15.
PMID: 22177093 [PubMed - indexed for MEDLINE]

29.Histone deacetylase inhibitors prevent the degradation and restore the activity of glucocerebrosidase in Gaucher disease.
Lu J, Yang C, Chen M, Ye DY, Lonser RR, Brady RO, Zhuang Z.
Proc Natl Acad Sci U S A. 2011 Dec 27;108(52):21200-5. Epub 2011 Dec 12.
PMID: 22160715 [PubMed - indexed for MEDLINE] Free PMC Article

30.Drosophila Piwi functions downstream of piRNA production mediating a chromatin-based transposon silencing mechanism in female germ line.
Wang SH, Elgin SC.
Proc Natl Acad Sci U S A. 2011 Dec 27;108(52):21164-9. Epub 2011 Dec 12.
PMID: 22160707 [PubMed - indexed for MEDLINE]

31.Miwi catalysis is required for piRNA amplification-independent LINE1 transposon silencing.
Reuter M, Berninger P, Chuma S, Shah H, Hosokawa M, Funaya C, Antony C, Sachidanandam R, Pillai RS.
Nature. 2011 Nov 27;480(7376):264-7. doi: 10.1038/nature10672.
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32.Curcumin analogue CDF inhibits pancreatic tumor growth by switching on suppressor microRNAs and attenuating EZH2 expression.
Bao B, Ali S, Banerjee S, Wang Z, Logna F, Azmi AS, Kong D, Ahmad A, Li Y, Padhye S, Sarkar FH.
Cancer Res. 2012 Jan 1;72(1):335-45. Epub 2011 Nov 22.
PMID: 22108826 [PubMed - indexed for MEDLINE]

33.Cdc7-Dbf4 is a gene-specific regulator of meiotic transcription in yeast.
Lo HC, Kunz RC, Chen X, Marullo A, Gygi SP, Hollingsworth NM.
Mol Cell Biol. 2012 Jan;32(2):541-57. Epub 2011 Nov 21.
PMID: 22106412 [PubMed - indexed for MEDLINE]

34.Recognition of CpG island chromatin by KDM2A requires direct and specific interaction with linker DNA.
Zhou JC, Blackledge NP, Farcas AM, Klose RJ.
Mol Cell Biol. 2012 Jan;32(2):479-89. Epub 2011 Nov 14.
PMID: 22083960 [PubMed - indexed for MEDLINE] Free PMC Article

35.RAD6 regulates the dosage of p53 by a combination of transcriptional and posttranscriptional mechanisms.
Chen S, Wang DL, Liu Y, Zhao L, Sun FL.
Mol Cell Biol. 2012 Jan;32(2):576-87. Epub 2011 Nov 14.
PMID: 22083959 [PubMed - indexed for MEDLINE]

36.Histone H1 recruitment by CHD8 is essential for suppression of the Wnt-β-catenin signaling pathway.
Nishiyama M, Skoultchi AI, Nakayama KI.
Mol Cell Biol. 2012 Jan;32(2):501-12. Epub 2011 Nov 14.
PMID: 22083958 [PubMed - indexed for MEDLINE]

37.CBP mediates NF-κB-dependent histone acetylation and estrogen receptor recruitment to an estrogen response element in the BIRC3 promoter.
Pradhan M, Baumgarten SC, Bembinster LA, Frasor J.
Mol Cell Biol. 2012 Jan;32(2):569-75. Epub 2011 Nov 14.
PMID: 22083956 [PubMed - indexed for MEDLINE]

38.Novel roles of Caenorhabditis elegans heterochromatin protein HP1 and linker histone in the regulation of innate immune gene expression.
Studencka M, Konzer A, Moneron G, Wenzel D, Opitz L, Salinas-Riester G, Bedet C, Krüger M, Hell SW, Wisniewski JR, Schmidt H, Palladino F, Schulze E, Jedrusik-Bode M.
Mol Cell Biol. 2012 Jan;32(2):251-65. Epub 2011 Nov 14.
PMID: 22083954 [PubMed - indexed for MEDLINE]

39.Limiting replication initiation factors execute the temporal programme of origin firing in budding yeast.
Mantiero D, Mackenzie A, Donaldson A, Zegerman P.
EMBO J. 2011 Nov 11;30(23):4805-14. doi: 10.1038/emboj.2011.404.
PMID: 22081107 [PubMed - indexed for MEDLINE]

40.PcG complexes set the stage for epigenetic inheritance of gene silencing in early S phase before replication.
Lanzuolo C, Lo Sardo F, Diamantini A, Orlando V.
PLoS Genet. 2011 Nov;7(11):e1002370. Epub 2011 Nov 3.
PMID: 22072989 [PubMed - indexed for MEDLINE] Free PMC Article

41.Activation of Bmp2-Smad1 signal and its regulation by coordinated alteration of H3K27 trimethylation in Ras-induced senescence.
Kaneda A, Fujita T, Anai M, Yamamoto S, Nagae G, Morikawa M, Tsuji S, Oshima M, Miyazono K, Aburatani H.
PLoS Genet. 2011 Nov;7(11):e1002359. Epub 2011 Nov 3.
PMID: 22072987 [PubMed - indexed for MEDLINE] Free PMC Article

42.EZH2 Mediates epigenetic silencing of neuroblastoma suppressor genes CASZ1, CLU, RUNX3, and NGFR.
Wang C, Liu Z, Woo CW, Li Z, Wang L, Wei JS, Marquez VE, Bates SE, Jin Q, Khan J, Ge K, Thiele CJ.
Cancer Res. 2012 Jan 1;72(1):315-24. Epub 2011 Nov 8.
PMID: 22068036 [PubMed - indexed for MEDLINE]

43.Spontaneous epigenetic variation in the Arabidopsis thaliana methylome.
Becker C, Hagmann J, Müller J, Koenig D, Stegle O, Borgwardt K, Weigel D.
Nature. 2011 Sep 20;480(7376):245-9. doi: 10.1038/nature10555.
PMID: 22057020 [PubMed - indexed for MEDLINE]

44.Nuclear PKM2 regulates β-catenin transactivation upon EGFR activation.
Yang W, Xia Y, Ji H, Zheng Y, Liang J, Huang W, Gao X, Aldape K, Lu Z.
Nature. 2011 Dec 1;480(7375):118-22.
PMID: 22056988 [PubMed - indexed for MEDLINE]

45.Chromatin-associated RNA interference components contribute to transcriptional regulation in Drosophila.
Cernilogar FM, Onorati MC, Kothe GO, Burroughs AM, Parsi KM, Breiling A, Lo Sardo F, Saxena A, Miyoshi K, Siomi H, Siomi MC, Carninci P, Gilmour DS, Corona DF, Orlando V.
Nature. 2011 Nov 6;480(7377):391-5. doi: 10.1038/nature10492.
PMID: 22056986 [PubMed - indexed for MEDLINE]

46.Identification of residues in chromodomain helicase DNA-binding protein 1 (Chd1) required for coupling ATP hydrolysis to nucleosome sliding.
Patel A, McKnight JN, Genzor P, Bowman GD.
J Biol Chem. 2011 Dec 23;286(51):43984-93. Epub 2011 Oct 28.
PMID: 22039057 [PubMed - indexed for MEDLINE]

47.Mapping intact protein isoforms in discovery mode using top-down proteomics.
Tran JC, Zamdborg L, Ahlf DR, Lee JE, Catherman AD, Durbin KR, Tipton JD, Vellaichamy A, Kellie JF, Li M, Wu C, Sweet SM, Early BP, Siuti N, LeDuc RD, Compton PD, Thomas PM, Kelleher NL.
Nature. 2011 Oct 30;480(7376):254-8. doi: 10.1038/nature10575.
PMID: 22037311 [PubMed - indexed for MEDLINE]

48.Correct end use during end joining of multiple chromosomal double strand breaks is influenced by repair protein RAD50, DNA-dependent protein kinase DNA-PKcs, and transcription context.
Gunn A, Bennardo N, Cheng A, Stark JM.
J Biol Chem. 2011 Dec 9;286(49):42470-82. Epub 2011 Oct 24.
PMID: 22027841 [PubMed - indexed for MEDLINE]

49.Monocyte-specific accessibility of a matrix attachment region in the tumor necrosis factor locus.
Biglione S, Tsytsykova AV, Goldfeld AE.
J Biol Chem. 2011 Dec 23;286(51):44126-33. Epub 2011 Oct 25.
PMID: 22027829 [PubMed - indexed for MEDLINE] Free PMC Article

50.Galectin-9 protein expression in endothelial cells is positively regulated by histone deacetylase 3.
Alam S, Li H, Margariti A, Martin D, Zampetaki A, Habi O, Cockerill G, Hu Y, Xu Q, Zeng L.
J Biol Chem. 2011 Dec 23;286(51):44211-7. Epub 2011 Oct 25.
PMID: 22027828 [PubMed - indexed for MEDLINE]

51.Curcumin enhances the efficacy of chemotherapy by tailoring p65NFκB-p300 cross-talk in favor of p53-p300 in breast cancer.
Sen GS, Mohanty S, Hossain DM, Bhattacharyya S, Banerjee S, Chakraborty J, Saha S, Ray P, Bhattacharjee P, Mandal D, Bhattacharya A, Chattopadhyay S, Das T, Sa G.
J Biol Chem. 2011 Dec 9;286(49):42232-47. Epub 2011 Oct 19.
PMID: 22013068 [PubMed - indexed for MEDLINE]

52.Transgenerational epigenetic inheritance of longevity in Caenorhabditis elegans.
Greer EL, Maures TJ, Ucar D, Hauswirth AG, Mancini E, Lim JP, Benayoun BA, Shi Y, Brunet A.
Nature. 2011 Oct 19;479(7373):365-71. doi: 10.1038/nature10572.
PMID: 22012258 [PubMed - indexed for MEDLINE]

53.Protein arginine methyltransferase Prmt5-Mep50 methylates histones H2A and H4 and the histone chaperone nucleoplasmin in Xenopus laevis eggs.
Wilczek C, Chitta R, Woo E, Shabanowitz J, Chait BT, Hunt DF, Shechter D.
J Biol Chem. 2011 Dec 9;286(49):42221-31. Epub 2011 Oct 18.
PMID: 22009756 [PubMed - indexed for MEDLINE]

54.The chromatin-binding protein HMGN1 regulates the expression of methyl CpG-binding protein 2 (MECP2) and affects the behavior of mice.
Abuhatzira L, Shamir A, Schones DE, Schäffer AA, Bustin M.
J Biol Chem. 2011 Dec 9;286(49):42051-62. Epub 2011 Oct 17.
PMID: 22009741 [PubMed - indexed for MEDLINE]

55.Corepressor protein CDYL functions as a molecular bridge between polycomb repressor complex 2 and repressive chromatin mark trimethylated histone lysine 27.
Zhang Y, Yang X, Gui B, Xie G, Zhang D, Shang Y, Liang J.
J Biol Chem. 2011 Dec 9;286(49):42414-25. Epub 2011 Oct 17.
PMID: 22009739 [PubMed - indexed for MEDLINE]

56.Oestrogen receptor-co-factor-chromatin specificity in the transcriptional regulation of breast cancer.
Zwart W, Theodorou V, Kok M, Canisius S, Linn S, Carroll JS.
EMBO J. 2011 Oct 14;30(23):4764-76. doi: 10.1038/emboj.2011.368.
PMID: 22002538 [PubMed - indexed for MEDLINE]

57.New centromeric component CENP-W is an RNA-associated nuclear matrix protein that interacts with nucleophosmin/B23 protein.
Chun Y, Park B, Koh W, Lee S, Cheon Y, Kim R, Che L, Lee S.
J Biol Chem. 2011 Dec 9;286(49):42758-69. Epub 2011 Oct 14.
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58.Role of amino acid insertions on intermolecular forces between arginine peptide condensed DNA helices: implications for protamine-DNA packaging in sperm.
DeRouchey JE, Rau DC.
J Biol Chem. 2011 Dec 9;286(49):41985-92. Epub 2011 Oct 12.
PMID: 21994948 [PubMed - indexed for MEDLINE]

59.Double-strand break-induced transcriptional silencing is associated with loss of tri-methylation at H3K4.
Seiler DM, Rouquette J, Schmid VJ, Strickfaden H, Ottmann C, Drexler GA, Mazurek B, Greubel C, Hable V, Dollinger G, Cremer T, Friedl AA.
Chromosome Res. 2011 Oct;19(7):883-99. Epub 2011 Oct 11.
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60.A distinct mechanism for coactivator versus corepressor function by histone methyltransferase G9a in transcriptional regulation.
Purcell DJ, Jeong KW, Bittencourt D, Gerke DS, Stallcup MR.
J Biol Chem. 2011 Dec 9;286(49):41963-71. Epub 2011 Oct 8.
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61.Transcriptional repression of the α7 nicotinic acetylcholine receptor subunit gene (CHRNA7) by activating protein-2α (AP-2α).
Finlay-Schultz J, Canastar A, Short M, El Gazzar M, Coughlan C, Leonard S.
J Biol Chem. 2011 Dec 9;286(49):42123-32. Epub 2011 Oct 6.
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62.Rapid, independent, and extensive amplification of telomeric repeats in pericentromeric regions in karyotypes of arvicoline rodents.
Rovatsos MT, Marchal JA, Romero-Fernández I, Fernández FJ, Giagia-Athanosopoulou EB, Sánchez A.
Chromosome Res. 2011 Oct;19(7):869-82. Epub 2011 Oct 7.
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63.SUMOylation and SUMO-interacting motif (SIM) of metastasis tumor antigen 1 (MTA1) synergistically regulate its transcriptional repressor function.
Cong L, Pakala SB, Ohshiro K, Li DQ, Kumar R.
J Biol Chem. 2011 Dec 23;286(51):43793-808. Epub 2011 Sep 29.
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64.PKC alpha regulates Sendai virus-mediated interferon induction through HDAC6 and β-catenin.
Zhu J, Coyne CB, Sarkar SN.
EMBO J. 2011 Sep 27;30(23):4838-49. doi: 10.1038/emboj.2011.351.
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65.The E3 ligase c-Cbl regulates dendritic cell activation.
Chiou SH, Shahi P, Wagner RT, Hu H, Lapteva N, Seethammagari M, Sun SC, Levitt JM, Spencer DM.
EMBO Rep. 2011 Sep 1;12(9):971-9. doi: 10.1038/embor.2011.143.
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66.USP22 regulates cell proliferation by deubiquitinating the transcriptional regulator FBP1.
Atanassov BS, Dent SY.
EMBO Rep. 2011 Sep 1;12(9):924-30. doi: 10.1038/embor.2011.140.
PMID: 21779003 [PubMed - indexed for MEDLINE]

67.Progressive methylation of ageing histones by Dot1 functions as a timer.
De Vos D, Frederiks F, Terweij M, van Welsem T, Verzijlbergen KF, Iachina E, de Graaf EL, Altelaar AF, Oudgenoeg G, Heck AJ, Krijgsveld J, Bakker BM, van Leeuwen F.
EMBO Rep. 2011 Sep 1;12(9):956-62. doi: 10.1038/embor.2011.131.
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1.The crystal structure of the inhibitor of growth 4 (ING4) dimerization domain reveals the functional organization of the ING family of chromatin binding proteins.
Culurgioni S, Munoz IG, Moreno A, Palacios A, Villate M, Palmero I, Montoya G, Blanco FJ.
J Biol Chem. 2012 Feb 9. [Epub ahead of print]
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2.HDAC6 deacetylates survivin for its nuclear export in breast cancer.
Riolo MT, Cooper ZA, Holloway MP, Cheng Y, Bianchi C, Eakirevich E, Ma L, Chin YE, Altura RA.
J Biol Chem. 2012 Feb 9. [Epub ahead of print]
PMID: 22334690 [PubMed - as supplied by publisher]

3.The N- and C-terminal domains determine the differential nucleosomal binding geometry and affinity of linker histone isotypes H10 and H1c.
Vyas P, Brown DT.
J Biol Chem. 2012 Feb 10. [Epub ahead of print]
PMID: 22334665 [PubMed - as supplied by publisher]

4.Monoubiquitinated H2A destabilizes photolesion-containing nucleosomes with the concomitant release of the UV-damaged DNA-binding protein E3 ligase.
Lan L, Nakajima S, Kapetanaki MG, Hsieh CL, Fagerburg M, Thickman K, Rodriguez-Collazo P, Leuba SH, Levine AS, Rapic-Otrin V.
J Biol Chem. 2012 Feb 10. [Epub ahead of print]
PMID: 22334663 [PubMed - as supplied by publisher]

5.Protooncogene Ski cooperates with the chromatin-remodeling factor Satb2 in specifying callosal neurons.
Baranek C, Dittrich M, Parthasarathy S, Bonnon CG, Britanova O, Lanshakov D, Boukhtouche F, Sommer JE, Colmenares C, Tarabykin V, Atanasoski S.
Proc Natl Acad Sci U S A. 2012 Feb 14. [Epub ahead of print]
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6.Epigenetic silencing of myogenic gene program by Myb-binding protein 1a suppresses myogenesis.
Yang CC, Liu H, Chen SL, Wang TH, Hsieh CL, Huang Y, Chen SJ, Chen HC, Yung BY, Chin-Ming Tan B.
EMBO J. 2012 Feb 14. doi: 10.1038/emboj.2012.24. [Epub ahead of print]
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7.MacroH2A1 regulates the balance between self-renewal and differentiation commitment in embryonic and adult stem cells.
Creppe C, Janich P, Cantariño N, Noguera M, Valero V, Musulén E, Douet J, Posavec M, Martín Caballero J, Sumoy L, Di Croce L, Benitah SA, Buschbeck M.
Mol Cell Biol. 2012 Feb 13. [Epub ahead of print]
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8.Epigenetic engineering: histone H3K9 acetylation is compatible with kinetochore structure and function.
Bergmann JH, Jakubsche JN, Martins NM, Kagansky A, Nakano M, Kimura H, Kelly DA, Turner BM, Masumoto H, Larionov V, Earnshaw WC.
J Cell Sci. 2012 Feb 13. [Epub ahead of print]
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9.Querkopf is a key marker of self-renewal and multipotency of adult neural stem cells.
Sheikh BN, Dixon MP, Thomas T, Voss AK.
J Cell Sci. 2012 Feb 13. [Epub ahead of print]
PMID: 22331353 [PubMed - as supplied by publisher]

10.Cancer genomics: Histone modification at the gene level.
Burgess DJ.
Nat Rev Genet. 2012 Feb 14. doi: 10.1038/nrg3181. [Epub ahead of print] No abstract available.
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11.Genome-wide enhancer prediction from epigenetic signatures using genetic algorithm-optimized support vector machines.
Fernández M, Miranda-Saavedra D.
Nucleic Acids Res. 2012 Feb 10. [Epub ahead of print]
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12.SIRT1 deacetylates SATB1 to facilitate MARHS2-MAR{varepsilon} interaction and promote {varepsilon}-globin expression.
Xue Z, Lv X, Song W, Wang X, Zhao GN, Wang WT, Xiong J, Mao BB, Yu W, Yang B, Wu J, Zhou LQ, Hao DL, Dong WJ, Liu DP, Liang CC.
Nucleic Acids Res. 2012 Feb 10. [Epub ahead of print]
PMID: 22328728 [PubMed - as supplied by publisher] Free Article

13.Protein-flexibility mediated coupling between photoswitching kinetics and surrounding viscosity of a photochromic fluorescent protein.
Kao YT, Zhu X, Min W.
Proc Natl Acad Sci U S A. 2012 Feb 10. [Epub ahead of print]
PMID: 22328153 [PubMed - as supplied by publisher]

14.The same pocket in menin binds both MLL and JUND but has opposite effects on transcription.
Huang J, Gurung B, Wan B, Matkar S, Veniaminova NA, Wan K, Merchant JL, Hua X, Lei M.
Nature. 2012 Feb 12. doi: 10.1038/nature10806. [Epub ahead of print]
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15.Control of ground-state pluripotency by allelic regulation of Nanog.
Miyanari Y, Torres-Padilla ME.
Nature. 2012 Feb 12. doi: 10.1038/nature10807. [Epub ahead of print]
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16.Arginine methylation controls growth regulation by E2F-1.
Cho EC, Zheng S, Munro S, Liu G, Carr SM, Moehlenbrink J, Lu YC, Stimson L, Khan O, Konietzny R, McGouran J, Coutts AS, Kessler B, Kerr DJ, Thangue NB.
EMBO J. 2012 Feb 10. doi: 10.1038/emboj.2012.17. [Epub ahead of print]
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17.A DNA 3′ phosphatase functions in active DNA demethylation in Arabidopsis.
Martínez-Macías MI, Qian W, Miki D, Pontes O, Liu Y, Tang K, Liu R, Morales-Ruiz T, Ariza RR, Roldán-Arjona T, Zhu JK.
Mol Cell. 2012 Feb 10;45(3):357-70.
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18.Chronic pain: emerging evidence for the involvement of epigenetics.
Denk F, McMahon SB.
Neuron. 2012 Feb 9;73(3):435-44.
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19.RYBP-PRC1 Complexes Mediate H2A Ubiquitylation at Polycomb Target Sites Independently of PRC2 and H3K27me3.
Tavares L, Dimitrova E, Oxley D, Webster J, Poot R, Demmers J, Bezstarosti K, Taylor S, Ura H, Koide H, Wutz A, Vidal M, Elderkin S, Brockdorff N.
Cell. 2012 Feb 8. [Epub ahead of print]
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20.Structure-based mechanistic insights into DNMT1-mediated maintenance DNA methylation.
Song J, Teplova M, Ishibe-Murakami S, Patel DJ.
Science. 2012 Feb 10;335(6069):709-12.
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21.Surprising complexity of the Asf1 histone chaperone-Rad53 kinase interaction.
Jiao Y, Seeger K, Lautrette A, Gaubert A, Mousson F, Guerois R, Mann C, Ochsenbein F.
Proc Natl Acad Sci U S A. 2012 Feb 9. [Epub ahead of print]
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22.Mutation of A677 in histone methyltransferase EZH2 in human B-cell lymphoma promotes hypertrimethylation of histone H3 on lysine 27 (H3K27).
McCabe MT, Graves AP, Ganji G, Diaz E, Halsey WS, Jiang Y, Smitheman KN, Ott HM, Pappalardi MB, Allen KE, Chen SB, Della Pietra A 3rd, Dul E, Hughes AM, Gilbert SA, Thrall SH, Tummino PJ, Kruger RG, Brandt M, Schwartz B, Creasy CL.
Proc Natl Acad Sci U S A. 2012 Feb 8. [Epub ahead of print]
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23.Defective transcription initiation causes postnatal growth failure in a mouse model of nucleotide excision repair (NER) progeria.
Kamileri I, Karakasilioti I, Sideri A, Kosteas T, Tatarakis A, Talianidis I, Garinis GA.
Proc Natl Acad Sci U S A. 2012 Feb 8. [Epub ahead of print]
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24.Lactate, a product of glycolytic metabolism, inhibits histone deacetylase activity and promotes changes in gene expression.
Latham T, Mackay L, Sproul D, Karim M, Culley J, Harrison DJ, Hayward L, Langridge-Smith P, Gilbert N, Ramsahoye BH.
Nucleic Acids Res. 2012 Feb 9. [Epub ahead of print]
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25.Population-specificity of human DNA methylation.
Fraser HB, Lam L, Neumann S, Kobor MS.
Genome Biol. 2012 Feb 9;13(2):R8. [Epub ahead of print]
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26.Structure and operation of the DNA-translocating type I DNA restriction enzymes.
Kennaway CK, Taylor JE, Song CF, Potrzebowski W, Nicholson W, White JH, Swiderska A, Obarska-Kosinska A, Callow P, Cooper LP, Roberts GA, Artero JB, Bujnicki JM, Trinick J, Kneale GG, Dryden DT.
Genes Dev. 2012 Jan 1;26(1):92-104. doi: 10.1101/gad.179085.111.
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27.PRC2 directly methylates GATA4 and represses its transcriptional activity.
He A, Shen X, Ma Q, Cao J, von Gise A, Zhou P, Wang G, Marquez VE, Orkin SH, Pu WT.
Genes Dev. 2012 Jan 1;26(1):37-42. doi: 10.1101/gad.173930.111.
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28.Cdc6 expression represses E-cadherin transcription and activates adjacent replication origins.
Sideridou M, Zakopoulou R, Evangelou K, Liontos M, Kotsinas A, Rampakakis E, Gagos S, Kahata K, Grabusic K, Gkouskou K, Trougakos IP, Kolettas E, Georgakilas AG, Volarevic S, Eliopoulos AG, Zannis-Hadjopoulos M, Moustakas A, Gorgoulis VG.
J Cell Biol. 2011 Dec 26;195(7):1123-40.
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29.The Cyc8-Tup1 complex inhibits transcription primarily by masking the activation domain of the recruiting protein.
Wong KH, Struhl K.
Genes Dev. 2011 Dec 1;25(23):2525-39.
PMID: 22156212 [PubMed - indexed for MEDLINE]

30.Restriction of histone gene transcription to S phase by phosphorylation of a chromatin boundary protein.
Kurat CF, Lambert JP, van Dyk D, Tsui K, van Bakel H, Kaluarachchi S, Friesen H, Kainth P, Nislow C, Figeys D, Fillingham J, Andrews BJ.
Genes Dev. 2011 Dec 1;25(23):2489-501.
PMID: 22156209 [PubMed - indexed for MEDLINE]

31.Histone deacetylase 3 is an epigenomic brake in macrophage alternative activation.
Mullican SE, Gaddis CA, Alenghat T, Nair MG, Giacomin PR, Everett LJ, Feng D, Steger DJ, Schug J, Artis D, Lazar MA.
Genes Dev. 2011 Dec 1;25(23):2480-8.
PMID: 22156208 [PubMed - indexed for MEDLINE]

32.Mechanisms and functions of Tet protein-mediated 5-methylcytosine oxidation.
Wu H, Zhang Y.
Genes Dev. 2011 Dec 1;25(23):2436-52. Review.
PMID: 22156206 [PubMed - indexed for MEDLINE]

33.Prepatterning of developmental gene expression by modified histones before zygotic genome activation.
Lindeman LC, Andersen IS, Reiner AH, Li N, Aanes H, Østrup O, Winata C, Mathavan S, Müller F, Aleström P, Collas P.
Dev Cell. 2011 Dec 13;21(6):993-1004. Epub 2011 Dec 1.
PMID: 22137762 [PubMed - indexed for MEDLINE]

34.Small RNAs prevent transcription-coupled loss of histone H3 lysine 9 methylation in Arabidopsis thaliana.
Enke RA, Dong Z, Bender J.
PLoS Genet. 2011 Oct;7(10):e1002350. Epub 2011 Oct 27.
PMID: 22046144 [PubMed - indexed for MEDLINE] Free PMC Article

35.Cross talk between immunoglobulin heavy-chain transcription and RNA surveillance during B cell development.
Tinguely A, Chemin G, Péron S, Sirac C, Reynaud S, Cogné M, Delpy L.
Mol Cell Biol. 2012 Jan;32(1):107-17. Epub 2011 Oct 28.
PMID: 22037763 [PubMed - indexed for MEDLINE]

36.Mouse PRDM9 DNA-binding specificity determines sites of histone H3 lysine 4 trimethylation for initiation of meiotic recombination.
Grey C, Barthès P, Chauveau-Le Friec G, Langa F, Baudat F, de Massy B.
PLoS Biol. 2011 Oct;9(10):e1001176. doi: 10.1371/journal.pbio.1001176. Epub 2011 Oct 18.
PMID: 22028627 [PubMed - indexed for MEDLINE] Free PMC Article

37.Histone H3 lysine 56 acetylation and the response to DNA replication fork damage.
Wurtele H, Kaiser GS, Bacal J, St-Hilaire E, Lee EH, Tsao S, Dorn J, Maddox P, Lisby M, Pasero P, Verreault A.
Mol Cell Biol. 2012 Jan;32(1):154-72. Epub 2011 Oct 24.
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38.TIEG1 inhibits breast cancer invasion and metastasis by inhibition of epidermal growth factor receptor (EGFR) transcription and the EGFR signaling pathway.
Jin W, Chen BB, Li JY, Zhu H, Huang M, Gu SM, Wang QQ, Chen JY, Yu S, Wu J, Shao ZM.
Mol Cell Biol. 2012 Jan;32(1):50-63. Epub 2011 Oct 24.
PMID: 22025675 [PubMed - indexed for MEDLINE]

39.Von Hippel-Lindau (VHL) inactivation in sporadic clear cell renal cancer: associations with germline VHL polymorphisms and etiologic risk factors.
Moore LE, Nickerson ML, Brennan P, Toro JR, Jaeger E, Rinsky J, Han SS, Zaridze D, Matveev V, Janout V, Kollarova H, Bencko V, Navratilova M, Szeszenia-Dabrowska N, Mates D, Schmidt LS, Lenz P, Karami S, Linehan WM, Merino M, Chanock S, Boffetta P, Chow WH, Waldman FM, Rothman N.
PLoS Genet. 2011 Oct;7(10):e1002312. Epub 2011 Oct 13.
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40.Preventing dangerous nonsense: selection for robustness to transcriptional error in human genes.
Cusack BP, Arndt PF, Duret L, Roest Crollius H.
PLoS Genet. 2011 Oct;7(10):e1002276. Epub 2011 Oct 13.
PMID: 22022272 [PubMed - indexed for MEDLINE] Free PMC Article

41.A BEN-domain-containing protein associates with heterochromatin and represses transcription.
Sathyan KM, Shen Z, Tripathi V, Prasanth KV, Prasanth SG.
J Cell Sci. 2011 Sep 15;124(Pt 18):3149-63.
PMID: 21914818 [PubMed - indexed for MEDLINE]

42.The myosin-interacting protein SMYD1 is essential for sarcomere organization.
Just S, Meder B, Berger IM, Etard C, Trano N, Patzel E, Hassel D, Marquart S, Dahme T, Vogel B, Fishman MC, Katus HA, Strähle U, Rottbauer W.
J Cell Sci. 2011 Sep 15;124(Pt 18):3127-36. Epub 2011 Aug 18.
PMID: 21852424 [PubMed - indexed for MEDLINE]

43.Organization of the synaptonemal complex during meiosis in Caenorhabditis elegans.
Schild-Prüfert K, Saito TT, Smolikov S, Gu Y, Hincapie M, Hill DE, Vidal M, McDonald K, Colaiácovo MP.
Genetics. 2011 Oct;189(2):411-21. Epub 2011 Aug 11.
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44.Characterization of DXZ4 conservation in primates implies important functional roles for CTCF binding, array expression and tandem repeat organization on the X chromosome.
McLaughlin CR, Chadwick BP.
Genome Biol. 2011;12(4):R37. Epub 2011 Apr 13.
PMID: 21489251 [PubMed - indexed for MEDLINE] Free PMC Article

45.Genomewide characterization of non-polyadenylated RNAs.
Yang L, Duff MO, Graveley BR, Carmichael GG, Chen LL.
Genome Biol. 2011;12(2):R16. Epub 2011 Feb 16.
PMID: 21324177 [PubMed - indexed for MEDLINE] Free PMC Article

46.A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets.
Cheng C, Yan KK, Yip KY, Rozowsky J, Alexander R, Shou C, Gerstein M.
Genome Biol. 2011;12(2):R15. Epub 2011 Feb 16.
PMID: 21324173 [PubMed - indexed for MEDLINE] Free PMC Article

47.A Drosophila model for the role of epigenetics in brain function and development.
Stilling RM, Fischer A.
Genome Biol. 2011;12(2):103. Epub 2011 Feb 16.
PMID: 21320297 [PubMed - indexed for MEDLINE]

48.DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines.
Bell JT, Pai AA, Pickrell JK, Gaffney DJ, Pique-Regi R, Degner JF, Gilad Y, Pritchard JK.
Genome Biol. 2011;12(1):R10. Epub 2011 Jan 20.
PMID: 21251332 [PubMed - indexed for MEDLINE] Free PMC Article

49.Silencing signals in plants: a long journey for small RNAs.
Molnar A, Melnyk C, Baulcombe DC.
Genome Biol. 2011;12(1):215. Epub 2011 Jan 11. Review.
PMID: 21235831 [PubMed - indexed for MEDLINE] Free PMC Article

1.Raf1 Is a DCAF for the Rik1 DDB1-Like Protein and Has Separable Roles in siRNA Generation and Chromatin Modification.
Buscaino A, White SA, Houston DR, Lejeune E, Simmer F, de Lima Alves F, Diyora PT, Urano T, Bayne EH, Rappsilber J, Allshire RC.
PLoS Genet. 2012 Feb;8(2):e1002499. Epub 2012 Feb 2.
PMID: 22319459 [PubMed - in process]

2.Sequence-specific recruitment of heterochromatin protein 1 via interaction with Kruppel-like factor 11, a human transcription factor involved in tumor suppression and metabolic diseases.
Lomberk G, Mathison AJ, Grzenda A, Seo S, Demars CJ, Rizvi S, Bonilla-Velez J, Calvo E, Fernandez-Zapico ME, Iovanna J, Buttar NS, Urrutia R.
J Biol Chem. 2012 Feb 8. [Epub ahead of print]
PMID: 22318730 [PubMed - as supplied by publisher]

3.The Cdc73 subunit of the Paf1 complex contains a C-terminal Ras-like domain that promotes association of the Paf1 complex with chromatin.
Amrich CG, Davis CP, Rogal WP, Shirra MK, Heroux A, Gardner RG, Arndt KM, Vandemark AP.
J Biol Chem. 2012 Feb 8. [Epub ahead of print]
PMID: 22318720 [PubMed - as supplied by publisher]

4.Functional dissection of lysine deacetylases reveals that HDAC1 and p300 regulate AMPK.
Lin YY, Kiihl S, Suhail Y, Liu SY, Chou YH, Kuang Z, Lu JY, Khor CN, Lin CL, Bader JS, Irizarry R, Boeke JD.
Nature. 2012 Feb 8;482(7384):251-5. doi: 10.1038/nature10804.
PMID: 22318606 [PubMed - in process]

5.Loss of the transcription factor nuclear factor-erythroid 2 (NF-E2) p45-related factor-2 (Nrf2) leads to dysregulation of immune functions, redox homeostasis and intracellular signalling in dendritic cells.
Aw Yeang HX, Hamdam JM, Al-Huseini LM, Sethu S, Djouhri L, Walsh J, Kitteringham N, Park BK, Goldring CE, Sathish JG.
J Biol Chem. 2012 Feb 6. [Epub ahead of print]
PMID: 22311972 [PubMed - as supplied by publisher]

6.Unmodified histone H3K4 and DNA-PK recruit AIRE to target genes.
Zumer K, Low AK, Jiang H, Saksela K, Peterlin BM.
Mol Cell Biol. 2012 Feb 6. [Epub ahead of print]
PMID: 22310661 [PubMed - as supplied by publisher]

7.Tcl1 protein functions as an inhibitor of de novo DNA methylation in B-cell chronic lymphocytic leukemia (CLL).
Palamarchuk A, Yan PS, Zanesi N, Wang L, Rodrigues B, Murphy M, Balatti V, Bottoni A, Nazaryan N, Alder H, Rassenti L, Kipps TJ, Freitas M, Croce CM, Pekarsky Y.
Proc Natl Acad Sci U S A. 2012 Jan 30. [Epub ahead of print]
PMID: 22308499 [PubMed - as supplied by publisher]

8.Vezf1 protein binding sites genome-wide are associated with pausing of elongating RNA polymerase II.
Gowher H, Brick K, Camerini-Otero RD, Felsenfeld G.
Proc Natl Acad Sci U S A. 2012 Jan 30. [Epub ahead of print]
PMID: 22308494 [PubMed - as supplied by publisher]

9.Functional redundancy between repair factor XLF and damage response mediator 53BP1 in V(D)J recombination and DNA repair.
Oksenych V, Alt FW, Kumar V, Schwer B, Wesemann DR, Hansen E, Patel H, Su A, Guo C.
Proc Natl Acad Sci U S A. 2012 Jan 30. [Epub ahead of print]
PMID: 22308489 [PubMed - as supplied by publisher]

10.Role of histone deacetylases in transcription factor regulation and cell cycle modulation in endothelial cells in response to disturbed flow.
Lee DY, Lee CI, Lin TE, Lim SH, Zhou J, Tseng YC, Chien S, Chiu JJ.
Proc Natl Acad Sci U S A. 2012 Jan 23. [Epub ahead of print]
PMID: 22308472 [PubMed - as supplied by publisher]

11.Jumonji domain-containing protein 3 regulates histone 3 lysine 27 methylation during bovine preimplantation development.
Canovas S, Cibelli JB, Ross PJ.
Proc Natl Acad Sci U S A. 2012 Jan 30. [Epub ahead of print]
PMID: 22308433 [PubMed - as supplied by publisher]

12.A novel lineage of myoviruses infecting cyanobacteria is widespread in the oceans.
Sabehi G, Shaulov L, Silver DH, Yanai I, Harel A, Lindell D.
Proc Natl Acad Sci U S A. 2012 Jan 23. [Epub ahead of print]
PMID: 22308387 [PubMed - as supplied by publisher]

13.Histone density is maintained during transcription mediated by the chromatin remodeler RSC and histone chaperone NAP1 in vitro.
Kuryan BG, Kim J, Tran NN, Lombardo SR, Venkatesh S, Workman JL, Carey M.
Proc Natl Acad Sci U S A. 2012 Jan 23. [Epub ahead of print]
PMID: 22308335 [PubMed - as supplied by publisher]

14.Histone deacetylases 1 and 2 regulate autophagy flux and skeletal muscle homeostasis in mice.
Moresi V, Carrer M, Grueter CE, Rifki OF, Shelton JM, Richardson JA, Bassel-Duby R, Olson EN.
Proc Natl Acad Sci U S A. 2012 Jan 31;109(5):1649-54. Epub 2012 Jan 17.
PMID: 22307625 [PubMed - in process]

15.Structural basis for recognition of H3K56-acetylated histone H3-H4 by the chaperone Rtt106.
Su D, Hu Q, Li Q, Thompson JR, Cui G, Fazly A, Davies BA, Botuyan MV, Zhang Z, Mer G.
Nature. 2012 Feb 5. doi: 10.1038/nature10861. [Epub ahead of print]
PMID: 22307274 [PubMed - as supplied by publisher]

16.Genome-wide association study identifies a variant in HDAC9 associated with large vessel ischemic stroke.
The International Stroke Genetics Consortium (ISGC); the Wellcome Trust Case Control Consortium 2 (WTCCC2), Bellenguez C, Bevan S, Gschwendtner A, Spencer CC, Burgess AI, Pirinen M, Jackson CA, Traylor M, Strange A, Su Z, Band G, Syme PD, Malik R, Pera J, Norrving B, Lemmens R, Freeman C, Schanz R, James T, Poole D, Murphy L, Segal H, Cortellini L, Cheng YC, Woo D, Nalls MA, Müller-Myhsok B, Meisinger C, Seedorf U, Ross-Adams H, Boonen S, Wloch-Kopec D, Valant V, Slark J, Furie K, Delavaran H, Langford C, Deloukas P, Edkins S, Hunt S, Gray E, Dronov S, Peltonen L, Gretarsdottir S, Thorleifsson G, Thorsteinsdottir U, Stefansson K, Boncoraglio GB, Parati EA, Attia J, Holliday E, Levi C, Franzosi MG, Goel A, Helgadottir A, Blackwell JM, Bramon E, Brown MA, Casas JP, Corvin A, Duncanson A, Jankowski J, Mathew CG, Palmer CN, Plomin R, Rautanen A, Sawcer SJ, Trembath RC, Viswanathan AC, Wood NW, Worrall BB, Kittner SJ, Mitchell BD, Kissela B, Meschia JF, Thijs V, Lindgren A, Macleod MJ, Slowik A, Walters M, Rosand J, Sharma P, Farrall M, Sudlow CL, Rothwell PM, Dichgans M, Donnelly P, Markus HS.
Nat Genet. 2012 Feb 5. doi: 10.1038/ng.1081. [Epub ahead of print]
PMID: 22306652 [PubMed - as supplied by publisher]

17.CENP-T-W-S-X Forms a Unique Centromeric Chromatin Structure with a Histone-like Fold.
Nishino T, Takeuchi K, Gascoigne KE, Suzuki A, Hori T, Oyama T, Morikawa K, Cheeseman IM, Fukagawa T.
Cell. 2012 Feb 3;148(3):487-501.
PMID: 22304917 [PubMed - in process]

18.A new histone at the centromere?
Foltz DR, Stukenberg PT.
Cell. 2012 Feb 3;148(3):394-6.
PMID: 22304909 [PubMed - in process]

19.A subgroup of SGS3-like proteins act redundantly in RNA-directed DNA methylation.
Xie M, Ren G, Costa-Nunes P, Pontes O, Yu B.
Nucleic Acids Res. 2012 Feb 1. [Epub ahead of print]
PMID: 22302148 [PubMed - as supplied by publisher] Free Article

20.Age-associated DNA methylation in pediatric populations.
Alisch RS, Barwick BG, Chopra P, Myrick LK, Satten GA, Conneely KN, Warren ST.
Genome Res. 2012 Feb 1. [Epub ahead of print]
PMID: 22300631 [PubMed - as supplied by publisher] Free Article

21.ELP3 controls active zone morphology by acetylating the ELKS family member Bruchpilot.
Miśkiewicz K, Jose LE, Bento-Abreu A, Fislage M, Taes I, Kasprowicz J, Swerts J, Sigrist S, Versées W, Robberecht W, Verstreken P.
Neuron. 2011 Dec 8;72(5):776-88.
PMID: 22153374 [PubMed - indexed for MEDLINE]

22.A barcode screen for epigenetic regulators reveals a role for the NuB4/HAT-B histone acetyltransferase complex in histone turnover.
Verzijlbergen KF, van Welsem T, Sie D, Lenstra TL, Turner DJ, Holstege FC, Kerkhoven RM, van Leeuwen F.
PLoS Genet. 2011 Oct;7(10):e1002284. Epub 2011 Oct 6.
PMID: 21998594 [PubMed - indexed for MEDLINE] Free PMC Article

23.Dynamic replacement of histone H3 variants reprograms epigenetic marks in early mouse embryos.
Akiyama T, Suzuki O, Matsuda J, Aoki F.
PLoS Genet. 2011 Oct;7(10):e1002279. Epub 2011 Oct 6.
PMID: 21998593 [PubMed - indexed for MEDLINE] Free PMC Article

24.Misregulation of Scm3p/HJURP causes chromosome instability in Saccharomyces cerevisiae and human cells.
Mishra PK, Au WC, Choy JS, Kuich PH, Baker RE, Foltz DR, Basrai MA.
PLoS Genet. 2011 Sep;7(9):e1002303. Epub 2011 Sep 29.
PMID: 21980305 [PubMed - indexed for MEDLINE] Free PMC Article

25.Retrotransposon-induced heterochromatin spreading in the mouse revealed by insertional polymorphisms.
Rebollo R, Karimi MM, Bilenky M, Gagnier L, Miceli-Royer K, Zhang Y, Goyal P, Keane TM, Jones S, Hirst M, Lorincz MC, Mager DL.
PLoS Genet. 2011 Sep;7(9):e1002301. Epub 2011 Sep 29.
PMID: 21980304 [PubMed - indexed for MEDLINE] Free PMC Article

26.Identification of type 1 diabetes-associated DNA methylation variable positions that precede disease diagnosis.
Rakyan VK, Beyan H, Down TA, Hawa MI, Maslau S, Aden D, Daunay A, Busato F, Mein CA, Manfras B, Dias KR, Bell CG, Tost J, Boehm BO, Beck S, Leslie RD.
PLoS Genet. 2011 Sep;7(9):e1002300. Epub 2011 Sep 29.
PMID: 21980303 [PubMed - indexed for MEDLINE] Free PMC Article

27.Methylation-associated dysregulation of the suppressor of cytokine signaling-3 gene in multiple myeloma.
Wilop S, van Gemmeren TB, Lentjes MH, van Engeland M, Herman JG, Brümmendorf TH, Jost E, Galm O.
Epigenetics. 2011 Aug 1;6(8):1047-52. Epub 2011 Aug 1.
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28.Gene regulation: implications of histone dispersal patterns for epigenetics.
Francis NJ.
Curr Biol. 2011 Sep 13;21(17):R659-61.
PMID: 21920297 [PubMed - indexed for MEDLINE]

29.The cohesin complex: a platform for checkpoint activation and DNA repair?
Paschal CR, Bhalla N.
Curr Biol. 2011 Sep 13;21(17):R649-50. No abstract available.
PMID: 21920292 [PubMed - indexed for MEDLINE]

30.Organization of the smallest eukaryotic spindle.
Gan L, Ladinsky MS, Jensen GJ.
Curr Biol. 2011 Sep 27;21(18):1578-83. Epub 2011 Sep 8.
PMID: 21906950 [PubMed - indexed for MEDLINE]

31.Identification of novel proteins associated with yeast snR30 small nucleolar RNA.
Lemay V, Hossain A, Osheim YN, Beyer AL, Dragon F.
Nucleic Acids Res. 2011 Dec;39(22):9659-70. Epub 2011 Sep 5.
PMID: 21893585 [PubMed - indexed for MEDLINE] Free PMC Article

32.Signal-induced Brd4 release from chromatin is essential for its role transition from chromatin targeting to transcriptional regulation.
Ai N, Hu X, Ding F, Yu B, Wang H, Lu X, Zhang K, Li Y, Han A, Lin W, Liu R, Chen R.
Nucleic Acids Res. 2011 Dec;39(22):9592-604. Epub 2011 Sep 2.
PMID: 21890894 [PubMed - indexed for MEDLINE] Free PMC Article

33.Treatment of breast cancer cells with DNA demethylating agents leads to a release of Pol II stalling at genes with DNA-hypermethylated regions upstream of TSS.
Tao Y, Liu S, Briones V, Geiman TM, Muegge K.
Nucleic Acids Res. 2011 Dec;39(22):9508-20. Epub 2011 Aug 31.
PMID: 21880597 [PubMed - indexed for MEDLINE] Free PMC Article

34.The F box protein partner of paired regulates stability of Drosophila centromeric histone H3, CenH3(CID).
Moreno-Moreno O, Medina-Giró S, Torras-Llort M, Azorín F.
Curr Biol. 2011 Sep 13;21(17):1488-93. Epub 2011 Aug 25.
PMID: 21871803 [PubMed - indexed for MEDLINE]

35.Loading of meiotic cohesin by SCC-2 is required for early processing of DSBs and for the DNA damage checkpoint.
Lightfoot J, Testori S, Barroso C, Martinez-Perez E.
Curr Biol. 2011 Sep 13;21(17):1421-30.
PMID: 21856158 [PubMed - indexed for MEDLINE]

36.Myc and PI3K/AKT signaling cooperatively repress FOXO3a-dependent PUMA and GADD45a gene expression.
Amente S, Zhang J, Lavadera ML, Lania L, Avvedimento EV, Majello B.
Nucleic Acids Res. 2011 Dec;39(22):9498-507. Epub 2011 Aug 10.
PMID: 21835778 [PubMed - indexed for MEDLINE] Free PMC Article

37.The relationship between tumor MSLN methylation and serum mesothelin (SMRP) in mesothelioma.
Nelson HH, Almquist LM, LaRocca JL, Plaza SL, Lambert-Messerlian GM, Sugarbaker DJ, Bueno R, Godleski JJ, Marsit CJ, Christensen BC, Kelsey KT.
Epigenetics. 2011 Aug 1;6(8):1029-34. Epub 2011 Aug 1.
PMID: 21775819 [PubMed - indexed for MEDLINE]

38.Methylation of specific CpG sites in the P2 promoter of parathyroid hormone-related protein determines the invasive potential of breast cancer cell lines.
Tost J, Hamzaoui H, Busato F, Neyret A, Mourah S, Dupont JM, Bouizar Z.
Epigenetics. 2011 Aug 1;6(8):1035-46. Epub 2011 Aug 1.
PMID: 21775817 [PubMed - indexed for MEDLINE]

39.The early life social environment and DNA methylation: DNA methylation mediating the long-term impact of social environments early in life.
Szyf M.
Epigenetics. 2011 Aug 1;6(8):971-8. Epub 2011 Aug 1. Review.
PMID: 21772123 [PubMed - indexed for MEDLINE]

40.Life and death of transcriptional co-activator p300.
Chen J, Li Q.
Epigenetics. 2011 Aug 1;6(8):957-61. Epub 2011 Aug 1. Review.
PMID: 21730760 [PubMed - indexed for MEDLINE] Free Article

41.Differential vitamin D 24-hydroxylase/CYP24A1 gene promoter methylation in endothelium from benign and malignant human prostate.
Deeb KK, Luo W, Karpf AR, Omilian AR, Bshara W, Tian L, Tangrea MA, Morrison CD, Johnson CS, Trump DL.
Epigenetics. 2011 Aug 1;6(8):994-1000. Epub 2011 Aug 1.
PMID: 21725204 [PubMed - indexed for MEDLINE]

42.Neuroblastoma epigenetics: from candidate gene approaches to genome-wide screenings.
Decock A, Ongenaert M, Vandesompele J, Speleman F.
Epigenetics. 2011 Aug 1;6(8):962-70. Epub 2011 Aug 1. Review.
PMID: 21725203 [PubMed - indexed for MEDLINE]

43.Establishment of paternal allele-specific DNA methylation at the imprinted mouse Gtl2 locus.
Nowak K, Stein G, Powell E, He LM, Naik S, Morris J, Marlow S, Davis TL.
Epigenetics. 2011 Aug 1;6(8):1012-20. Epub 2011 Aug 1.
PMID: 21725202 [PubMed - indexed for MEDLINE]

44.Dynamics of DNA methylation levels in maternal and paternal rabbit genomes after fertilization.
Reis Silva AR, Adenot P, Daniel N, Archilla C, Peynot N, Lucci CM, Beaujean N, Duranthon V.
Epigenetics. 2011 Aug 1;6(8):987-93. Epub 2011 Aug 1.
PMID: 21725201 [PubMed - indexed for MEDLINE]

45.The depletion of DNA methyltransferase-1 and the epigenetic effects of 5-aza-2′deoxycytidine (decitabine) are differentially regulated by cell cycle progression.
Al-Salihi M, Yu M, Burnett DM, Alexander A, Samlowski WE, Fitzpatrick FA.
Epigenetics. 2011 Aug 1;6(8):1021-8. Epub 2011 Aug 1.
PMID: 21725200 [PubMed - indexed for MEDLINE]

46.Lymphovascular invasion of colorectal cancer is correlated to SPARC expression in the tumor stromal microenvironment.
Yoshimura T, Nagahara M, Kuo C, Turner RR, Soon-Shiong P, Hoon DS.
Epigenetics. 2011 Aug 1;6(8):1001-11. Epub 2011 Aug 1.
PMID: 21725199 [PubMed - indexed for MEDLINE]

47.Highlighting chromosome loops in DNA-picked chromatin (DPC).
Abbondanza C, De Rosa C, Ombra MN, Aceto F, Medici N, Altucci L, Moncharmont B, Puca GA, Porcellini A, Avvedimento EV, Perillo B.
Epigenetics. 2011 Aug 1;6(8):979-86. Epub 2011 Aug 1.
PMID: 21725198 [PubMed - indexed for MEDLINE]

48.Alternative transcription exceeds alternative splicing in generating the transcriptome diversity of cerebellar development.
Pal S, Gupta R, Kim H, Wickramasinghe P, Baubet V, Showe LC, Dahmane N, Davuluri RV.
Genome Res. 2011 Aug;21(8):1260-72. Epub 2011 Jun 28.
PMID: 21712398 [PubMed - indexed for MEDLINE] Free PMC Article

49.Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis.
Bogdanovic O, Long SW, van Heeringen SJ, Brinkman AB, Gómez-Skarmeta JL, Stunnenberg HG, Jones PL, Veenstra GJ.
Genome Res. 2011 Aug;21(8):1313-27. Epub 2011 Jun 2.
PMID: 21636662 [PubMed - indexed for MEDLINE] Free PMC Article

50.Epigenetic signatures distinguish multiple classes of enhancers with distinct cellular functions.
Zentner GE, Tesar PJ, Scacheri PC.
Genome Res. 2011 Aug;21(8):1273-83. Epub 2011 Jun 1.
PMID: 21632746 [PubMed - indexed for MEDLINE] Free PMC Article

1.Disparity in the DNA translocase domains of SWI/SNF and ISW2.
Dechassa ML, Hota SK, Sen P, Chatterjee N, Prasad P, Bartholomew B.
Nucleic Acids Res. 2012 Jan 31. [Epub ahead of print]
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2.Enhancer decommissioning by LSD1 during embryonic stem cell differentiation.
Whyte WA, Bilodeau S, Orlando DA, Hoke HA, Frampton GM, Foster CT, Cowley SM, Young RA.
Nature. 2012 Feb 1. doi: 10.1038/nature10805. [Epub ahead of print]
PMID: 22297846 [PubMed - as supplied by publisher]

3.Identification and Characteriation of Nardilysin as a Novel Dimethyl H3K4 Binding Protein Involved in Transcriptional Regulation.
Li J, Chu M, Wang S, Chan D, Qi S, Wu M, Zhou Z, Li J, Nishi E, Qin J, Wong J.
J Biol Chem. 2012 Jan 30. [Epub ahead of print]
PMID: 22294699 [PubMed - as supplied by publisher]

4.DNA methylation profiling identifies epigenetic dysregulation in pancreatic islets from type 2 diabetic patients.
Volkmar M, Dedeurwaerder S, Cunha DA, Ndlovu MN, Defrance M, Deplus R, Calonne E, Volkmar U, Igoillo-Esteve M, Naamane N, Del Guerra S, Masini M, Bugliani M, Marchetti P, Cnop M, Eizirik DL, Fuks F.
EMBO J. 2012 Jan 31. doi: 10.1038/emboj.2011.503. [Epub ahead of print]
PMID: 22293752 [PubMed - as supplied by publisher]

5.Heterochromatin formation promotes longevity and represses ribosomal RNA synthesis.
Larson K, Yan SJ, Tsurumi A, Liu J, Zhou J, Gaur K, Guo D, Eickbush TH, Li WX.
PLoS Genet. 2012 Jan;8(1):e1002473. Epub 2012 Jan 26.
PMID: 22291607 [PubMed - in process] Free Article

6.DNA methylation and gene expression changes in monozygotic twins discordant for psoriasis: identification of epigenetically dysregulated genes.
Gervin K, Vigeland MD, Mattingsdal M, Hammerø M, Nygård H, Olsen AO, Brandt I, Harris JR, Undlien DE, Lyle R.
PLoS Genet. 2012 Jan;8(1):e1002454. Epub 2012 Jan 19.
PMID: 22291603 [PubMed - in process] Free Article

7.Understanding transgenerational epigenetic inheritance via the gametes in mammals.
Daxinger L, Whitelaw E.
Nat Rev Genet. 2012 Jan 31. doi: 10.1038/nrg3188. [Epub ahead of print]
PMID: 22290458 [PubMed - as supplied by publisher]

8.Twist-1 induces Ezh2 recruitment regulating histone methylation along the Ink4A/Arf locus in mesenchymal stem cells.
Cakouros D, Isenmann S, Cooper L, Zannettino A, Anderson P, Glackin C, Gronthos S.
Mol Cell Biol. 2012 Jan 30. [Epub ahead of print]
PMID: 22290439 [PubMed - as supplied by publisher]

9.Transcriptional regulation of gene expression during osmotic stress responses by the mammalian target of rapamycin.
Ortells MC, Morancho B, Drews-Elger K, Viollet B, Laderoute KR, López-Rodríguez C, Aramburu J.
Nucleic Acids Res. 2012 Jan 28. [Epub ahead of print]
PMID: 22287635 [PubMed - as supplied by publisher] Free Article

10.Association of the interferon-β gene with pericentromeric heterochromatin is dynamically regulated during virus infection through a YY1-dependent mechanism.
Josse T, Mokrani-Benhelli H, Benferhat R, Shestakova E, Mansuroglu Z, Kakanakou H, Billecocq A, Bouloy M, Bonnefoy E.
Nucleic Acids Res. 2012 Jan 28. [Epub ahead of print]
PMID: 22287632 [PubMed - as supplied by publisher] Free Article

11.Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation.
McCarthy DJ, Chen Y, Smyth GK.
Nucleic Acids Res. 2012 Jan 28. [Epub ahead of print]
PMID: 22287627 [PubMed - as supplied by publisher] Free Article

12.Somatic histone H3 alterations in pediatric diffuse intrinsic pontine gliomas and non-brainstem glioblastomas.
St. Jude Children’s Research Hospital–Washington University Pediatric Cancer Genome Project, Wu G, Broniscer A, McEachron TA, Lu C, Paugh BS, Becksfort J, Qu C, Ding L, Huether R, Parker M, Zhang J, Gajjar A, Dyer MA, Mullighan CG, Gilbertson RJ, Mardis ER, Wilson RK, Downing JR, Ellison DW, Zhang J, Baker SJ.
Nat Genet. 2012 Jan 29. doi: 10.1038/ng.1102. [Epub ahead of print]
PMID: 22286216 [PubMed - as supplied by publisher]

13.Driver mutations in histone H3.3 and chromatin remodelling genes in paediatric glioblastoma.
Schwartzentruber J, Korshunov A, Liu XY, Jones DT, Pfaff E, Jacob K, Sturm D, Fontebasso AM, Quang DA, Tönjes M, Hovestadt V, Albrecht S, Kool M, Nantel A, Konermann C, Lindroth A, Jäger N, Rausch T, Ryzhova M, Korbel JO, Hielscher T, Hauser P, Garami M, Klekner A, Bognar L, Ebinger M, Schuhmann MU, Scheurlen W, Pekrun A, Frühwald MC, Roggendorf W, Kramm C, Dürken M, Atkinson J, Lepage P, Montpetit A, Zakrzewska M, Zakrzewski K, Liberski PP, Dong Z, Siegel P, Kulozik AE, Zapatka M, Guha A, Malkin D, Felsberg J, Reifenberger G, von Deimling A, Ichimura K, Collins VP, Witt H, Milde T, Witt O, Zhang C, Castelo-Branco P, Lichter P, Faury D, Tabori U, Plass C, Majewski J, Pfister SM, Jabado N.
Nature. 2012 Jan 29. doi: 10.1038/nature10833. [Epub ahead of print]
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14.Rapid Establishment of Genetic Incompatibility through Natural Epigenetic Variation.
Durand S, Bouché N, Perez Strand E, Loudet O, Camilleri C.
Curr Biol. 2012 Jan 24. [Epub ahead of print]
PMID: 22285031 [PubMed - as supplied by publisher]

15.Genetics. Sowing the seeds of centromeres.
Jansen LE.
Science. 2012 Jan 20;335(6066):299-300. No abstract available.
PMID: 22267803 [PubMed - indexed for MEDLINE]

16.PRDM1 is a tumor suppressor gene in natural killer cell malignancies.
Küçük C, Iqbal J, Hu X, Gaulard P, De Leval L, Srivastava G, Au WY, McKeithan TW, Chan WC.
Proc Natl Acad Sci U S A. 2011 Dec 13;108(50):20119-24. Epub 2011 Dec 5.
PMID: 22143801 [PubMed - indexed for MEDLINE]

17.Dividing a supercoiled DNA molecule into two independent topological domains.
Leng F, Chen B, Dunlap DD.
Proc Natl Acad Sci U S A. 2011 Dec 13;108(50):19973-8. Epub 2011 Nov 28.
PMID: 22123985 [PubMed - indexed for MEDLINE]

18.Human artificial chromosome (HAC) vector with a conditional centromere for correction of genetic deficiencies in human cells.
Kim JH, Kononenko A, Erliandri I, Kim TA, Nakano M, Iida Y, Barrett JC, Oshimura M, Masumoto H, Earnshaw WC, Larionov V, Kouprina N.
Proc Natl Acad Sci U S A. 2011 Dec 13;108(50):20048-53. Epub 2011 Nov 28.
PMID: 22123967 [PubMed - indexed for MEDLINE] Free PMC Article

19.Neurotrophin-mediated degradation of histone methyltransferase by S-nitrosylation cascade regulates neuronal differentiation.
Sen N, Snyder SH.
Proc Natl Acad Sci U S A. 2011 Dec 13;108(50):20178-83. Epub 2011 Nov 28.
PMID: 22123949 [PubMed - indexed for MEDLINE]

20.The AAA-ATPase VCP/p97 promotes 53BP1 recruitment by removing L3MBTL1 from DNA double-strand breaks.
Acs K, Luijsterburg MS, Ackermann L, Salomons FA, Hoppe T, Dantuma NP.
Nat Struct Mol Biol. 2011 Nov 27;18(12):1345-50. doi: 10.1038/nsmb.2188.
PMID: 22120668 [PubMed - indexed for MEDLINE]

21.Extensive, clustered parental imprinting of protein-coding and noncoding RNAs in developing maize endosperm.
Zhang M, Zhao H, Xie S, Chen J, Xu Y, Wang K, Zhao H, Guan H, Hu X, Jiao Y, Song W, Lai J.
Proc Natl Acad Sci U S A. 2011 Dec 13;108(50):20042-7. Epub 2011 Nov 23.
PMID: 22114195 [PubMed - indexed for MEDLINE] Free PMC Article

22.The E3 ubiquitin ligase Rnf8 stabilizes Tpp1 to promote telomere end protection.
Rai R, Li JM, Zheng H, Lok GT, Deng Y, Huen MS, Chen J, Jin J, Chang S.
Nat Struct Mol Biol. 2011 Nov 20;18(12):1400-7. doi: 10.1038/nsmb.2172.
PMID: 22101936 [PubMed - indexed for MEDLINE]

23.Point centromeres contain more than a single centromere-specific Cse4 (CENP-A) nucleosome.
Lawrimore J, Bloom KS, Salmon ED.
J Cell Biol. 2011 Nov 14;195(4):573-82.
PMID: 22084307 [PubMed - indexed for MEDLINE]

24.CENP-A exceeds microtubule attachment sites in centromere clusters of both budding and fission yeast.
Coffman VC, Wu P, Parthun MR, Wu JQ.
J Cell Biol. 2011 Nov 14;195(4):563-72.
PMID: 22084306 [PubMed - indexed for MEDLINE]

25.Differential effects on p53-mediated cell cycle arrest vs. apoptosis by p90.
Dai C, Tang Y, Jung SY, Qin J, Aaronson SA, Gu W.
Proc Natl Acad Sci U S A. 2011 Nov 22;108(47):18937-42. Epub 2011 Nov 14.
PMID: 22084066 [PubMed - indexed for MEDLINE]

26.The elongation rate of RNA polymerase determines the fate of transcribed nucleosomes.
Bintu L, Kopaczynska M, Hodges C, Lubkowska L, Kashlev M, Bustamante C.
Nat Struct Mol Biol. 2011 Nov 13;18(12):1394-9. doi: 10.1038/nsmb.2164.
PMID: 22081017 [PubMed - indexed for MEDLINE]

27.Recognition of enhancer element-specific histone methylation by TIP60 in transcriptional activation.
Jeong KW, Kim K, Situ AJ, Ulmer TS, An W, Stallcup MR.
Nat Struct Mol Biol. 2011 Nov 13;18(12):1358-65. doi: 10.1038/nsmb.2153.
PMID: 22081016 [PubMed - indexed for MEDLINE]

28.The Chp1-Tas3 core is a multifunctional platform critical for gene silencing by RITS.
Schalch T, Job G, Shanker S, Partridge JF, Joshua-Tor L.
Nat Struct Mol Biol. 2011 Nov 13;18(12):1351-7. doi: 10.1038/nsmb.2151.
PMID: 22081013 [PubMed - indexed for MEDLINE]

29.Detection of β cell death in diabetes using differentially methylated circulating DNA.
Akirav EM, Lebastchi J, Galvan EM, Henegariu O, Akirav M, Ablamunits V, Lizardi PM, Herold KC.
Proc Natl Acad Sci U S A. 2011 Nov 22;108(47):19018-23. Epub 2011 Nov 9.
PMID: 22074781 [PubMed - indexed for MEDLINE] Free PMC Article

30.Multiple Cdt1 molecules act at each origin to load replication-competent Mcm2-7 helicases.
Takara TJ, Bell SP.
EMBO J. 2011 Nov 1;30(24):4885-96. doi: 10.1038/emboj.2011.394.
PMID: 22045335 [PubMed - indexed for MEDLINE]

31.Mule determines the apoptotic response to HDAC inhibitors by targeted ubiquitination and destruction of HDAC2.
Zhang J, Kan S, Huang B, Hao Z, Mak TW, Zhong Q.
Genes Dev. 2011 Dec 15;25(24):2610-8. Epub 2011 Oct 20.
PMID: 22016339 [PubMed - indexed for MEDLINE]

32.Selective requirement of H2B N-Terminal tail for p14ARF-induced chromatin silencing.
Choi J, Kim H, Kim K, Lee B, Lu W, An W.
Nucleic Acids Res. 2011 Nov;39(21):9167-80. Epub 2011 Aug 16.
PMID: 21846774 [PubMed - indexed for MEDLINE] Free PMC Article

33.Regulation of SNAIL1 and E-cadherin function by DNMT1 in a DNA methylation-independent context.
Espada J, Peinado H, Lopez-Serra L, Setién F, Lopez-Serra P, Portela A, Renart J, Carrasco E, Calvo M, Juarranz A, Cano A, Esteller M.
Nucleic Acids Res. 2011 Nov;39(21):9194-205. Epub 2011 Aug 16.
PMID: 21846773 [PubMed - indexed for MEDLINE] Free PMC Article

34.From crystal and NMR structures, footprints and cryo-electron-micrographs to large and soft structures: nanoscale modeling of the nucleosomal stem.
Meyer S, Becker NB, Syed SH, Goutte-Gattat D, Shukla MS, Hayes JJ, Angelov D, Bednar J, Dimitrov S, Everaers R.
Nucleic Acids Res. 2011 Nov;39(21):9139-54. Epub 2011 Aug 10.
PMID: 21835779 [PubMed - indexed for MEDLINE] Free PMC Article

35.Identifying transcriptional start sites of human microRNAs based on high-throughput sequencing data.
Chien CH, Sun YM, Chang WC, Chiang-Hsieh PY, Lee TY, Tsai WC, Horng JT, Tsou AP, Huang HD.
Nucleic Acids Res. 2011 Nov;39(21):9345-56. Epub 2011 Aug 5.
PMID: 21821656 [PubMed - indexed for MEDLINE] Free PMC Article

36.Handpicking epigenetic marks with PHD fingers.
Musselman CA, Kutateladze TG.
Nucleic Acids Res. 2011 Nov;39(21):9061-71. Epub 2011 Aug 3. Review.
PMID: 21813457 [PubMed - indexed for MEDLINE] Free PMC Article

1.DNMT1 modulates gene expression without its catalytic activity partially through its interactions with histone-modifying enzymes.
Clements EG, Mohammad HP, Leadem BR, Easwaran H, Cai Y, Van Neste L, Baylin SB.
Nucleic Acids Res. 2012 Jan 25. [Epub ahead of print]
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2.PARAMECIUM BURSARIA CHLORELLA VIRUS 1 ENCODES A POLYAMINE ACETYLTRANSFERASE.
Charlop-Powers Z, Jakoncic J, Gurnon JR, Van Etten JL, Zhou MM.
J Biol Chem. 2012 Jan 25. [Epub ahead of print]
PMID: 22277659 [PubMed - as supplied by publisher]

3.Ligand-dependent corepressor (LCoR) recruitment by Kruppel-like factor 6 (KLF6) regulates expression of the cyclin-dependent kinase inhibitor CDKN1A Gene.
Calderon MR, Verway M, An BS, Difeo A, Bismar TA, Ann DK, Martignetti JA, Shalom-Barak T, White JH.
J Biol Chem. 2012 Jan 25. [Epub ahead of print]
PMID: 22277651 [PubMed - as supplied by publisher]

4.Progressive Polycomb Assembly on H3K27me3 Compartments Generates Polycomb Bodies with Developmentally Regulated Motion.
Cheutin T, Cavalli G.
PLoS Genet. 2012 Jan;8(1):e1002465. Epub 2012 Jan 19.
PMID: 22275876 [PubMed - in process]

5.The Ph1 Locus Suppresses Cdk2-Type Activity during Premeiosis and Meiosis in Wheat.
Greer E, Martín AC, Pendle A, Colas I, Jones AM, Moore G, Shaw P.
Plant Cell. 2012 Jan 24. [Epub ahead of print]
PMID: 22274628 [PubMed - as supplied by publisher]

6.The splicing factor SR45 affects the RNA-directed DNA methylation pathway in Arabidopsis.
Ausin I, Greenberg MV, Li CF, Jacobsen SE.
Epigenetics. 2012 Jan 1;7(1). [Epub ahead of print]
PMID: 22274613 [PubMed - as supplied by publisher]

7.Sensitive quantitative analysis of murine LINE1 DNA methylation using high resolution melt analysis.
Newman M, Blyth BJ, Hussey DJ, Jardine D, Sykes PJ, Ormsby RJ.
Epigenetics. 2012 Jan 1;7(1). [Epub ahead of print]
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8.Heat shock protein 90 alpha (Hsp90α) is phosphorylated in response to DNA damage and accumulates in repair foci.
Quanz M, Herbette A, Sayarath M, de Koning L, Dubois T, Sun JS, Dutreix M.
J Biol Chem. 2012 Jan 23. [Epub ahead of print]
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9.Crossover Distribution and Frequency are Regulated by him-5 in Caenorhabditis elegans.
Meneely PM, McGovern OL, Heinis FI, Yanowitz JL.
Genetics. 2012 Jan 20. [Epub ahead of print]
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10.Epigenetic repression of cardiac progenitor gene expression by Ezh2 is required for postnatal cardiac homeostasis.
Delgado-Olguín P, Huang Y, Li X, Christodoulou D, Seidman CE, Seidman JG, Tarakhovsky A, Bruneau BG.
Nat Genet. 2012 Jan 22. doi: 10.1038/ng.1068. [Epub ahead of print]
PMID: 22267199 [PubMed - as supplied by publisher]

11.Chronic hypoxia compromises repair of DNA double-strand breaks to drive genetic instability.
Kumareswaran R, Ludkovski O, Meng A, Sykes J, Pintilie M, Bristow RG.
J Cell Sci. 2012 Jan 20. [Epub ahead of print]
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12.Understanding the language of Lys36 methylation at histone H3.
Wagner EJ, Carpenter PB.
Nat Rev Mol Cell Biol. 2012 Jan 23;13(2):115-26. doi: 10.1038/nrm3274.
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13.The plasticity of WDR5 peptide-binding cleft enables the binding of the SET1 family of histone methyltransferases.
Zhang P, Lee H, Brunzelle JS, Couture JF.
Nucleic Acids Res. 2012 Jan 20. [Epub ahead of print]
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14.Connecting threads: epigenetics and metabolism.
Katada S, Imhof A, Sassone-Corsi P.
Cell. 2012 Jan 20;148(1-2):24-8.
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15.Centromeres Poised En Pointe: CDKs Put a Hold on CENP-A Assembly.
Stimpson KM, Sullivan BA.
Dev Cell. 2012 Jan 17;22(1):1-2.
PMID: 22264723 [PubMed - in process]

16.PREPARATION OF A SITE-SPECIFIC T=mCG CIS-SYN CYCLOBUTANE DIMER-CONTAINING TEMPLATE AND ITS ERROR-FREE BYPASS BY YEAST AND HUMAN POLYMERASE ETA.
Song Q, Sherrer SM, Suo Z, Taylor JS.
J Biol Chem. 2012 Jan 18. [Epub ahead of print]
PMID: 22262850 [PubMed - as supplied by publisher] Free Article

17.The leukemia-associated fusion-protein Tel-platelet derived growth factor receptor B (Tel-PdgfRB) inhibits transcriptional repression of the PTPN13 gene by the interferon consensus sequence binding protein (Icsbp).
Huang W, Hu L, Bei L, Hjort E, Eklund EA.
J Biol Chem. 2012 Jan 18. [Epub ahead of print]
PMID: 22262849 [PubMed - as supplied by publisher] Free Article

18.Serine/threonine phosphatase (SP-STP), secreted from Streptococcus pyogenes, is a proapoptotic protein.
Agarwal S, Agarwal S, Jin H, Pancholi P, Pancholi V.
J Biol Chem. 2012 Jan 19. [Epub ahead of print]
PMID: 22262847 [PubMed - as supplied by publisher] Free Article

19.Structure of the C-terminal tandem BRCT repeats of Rtt107 reveals a critical role in the interaction with γH2A during DNA damage repair.
Li X, Liu K, Li F, Wang J, Huang H, Wu J, Shi Y.
J Biol Chem. 2012 Jan 19. [Epub ahead of print]
PMID: 22262834 [PubMed - as supplied by publisher] Free Article

20.RNA elimination machinery targeting meiotic mRNAs promotes facultative heterochromatin formation.
Zofall M, Yamanaka S, Reyes-Turcu FE, Zhang K, Rubin C, Grewal SI.
Science. 2012 Jan 6;335(6064):96-100. Epub 2011 Dec 1.
PMID: 22144463 [PubMed - indexed for MEDLINE]

21.HSV-1 gene expression from reactivated ganglia is disordered and concurrent with suppression of latency-associated transcript and miRNAs.
Du T, Zhou G, Roizman B.
Proc Natl Acad Sci U S A. 2011 Nov 15;108(46):18820-4. Epub 2011 Nov 7.
PMID: 22065742 [PubMed - indexed for MEDLINE]

22.Somatic mosaic IDH1 and IDH2 mutations are associated with enchondroma and spindle cell hemangioma in Ollier disease and Maffucci syndrome.
Pansuriya TC, van Eijk R, d’Adamo P, van Ruler MA, Kuijjer ML, Oosting J, Cleton-Jansen AM, van Oosterwijk JG, Verbeke SL, Meijer D, van Wezel T, Nord KH, Sangiorgi L, Toker B, Liegl-Atzwanger B, San-Julian M, Sciot R, Limaye N, Kindblom LG, Daugaard S, Godfraind C, Boon LM, Vikkula M, Kurek KC, Szuhai K, French PJ, Bovée JV.
Nat Genet. 2011 Nov 6;43(12):1256-61. doi: 10.1038/ng.1004.
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23.Drosophila CENH3 is sufficient for centromere formation.
Mendiburo MJ, Padeken J, Fülöp S, Schepers A, Heun P.
Science. 2011 Nov 4;334(6056):686-90.
PMID: 22053052 [PubMed - indexed for MEDLINE]

24.RNAP II CTD phosphorylated on threonine-4 is required for histone mRNA 3′ end processing.
Hsin JP, Sheth A, Manley JL.
Science. 2011 Nov 4;334(6056):683-6.
PMID: 22053051 [PubMed - indexed for MEDLINE]

25.A homolog of male sex-determining factor SRY cooperates with a transposon-derived CENP-B protein to control sex-specific directed recombination.
Matsuda E, Sugioka-Sugiyama R, Mizuguchi T, Mehta S, Cui B, Grewal SI.
Proc Natl Acad Sci U S A. 2011 Nov 15;108(46):18754-9. Epub 2011 Oct 31.
PMID: 22042869 [PubMed - indexed for MEDLINE]

26.Somatic retrotransposition alters the genetic landscape of the human brain.
Baillie JK, Barnett MW, Upton KR, Gerhardt DJ, Richmond TA, De Sapio F, Brennan PM, Rizzu P, Smith S, Fell M, Talbot RT, Gustincich S, Freeman TC, Mattick JS, Hume DA, Heutink P, Carninci P, Jeddeloh JA, Faulkner GJ.
Nature. 2011 Oct 30;479(7374):534-7. doi: 10.1038/nature10531.
PMID: 22037309 [PubMed - indexed for MEDLINE]

27.Cd8 enhancer E8I and Runx factors regulate CD8α expression in activated CD8+ T cells.
Hassan H, Sakaguchi S, Tenno M, Kopf A, Boucheron N, Carpenter AC, Egawa T, Taniuchi I, Ellmeier W.
Proc Natl Acad Sci U S A. 2011 Nov 8;108(45):18330-5. Epub 2011 Oct 24.
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28.Jarid1b targets genes regulating development and is involved in neural differentiation.
Schmitz SU, Albert M, Malatesta M, Morey L, Johansen JV, Bak M, Tommerup N, Abarrategui I, Helin K.
EMBO J. 2011 Nov 16;30(22):4586-600.
PMID: 22020125 [PubMed - indexed for MEDLINE]

29.A peek into the complex realm of histone phosphorylation.
Banerjee T, Chakravarti D.
Mol Cell Biol. 2011 Dec;31(24):4858-73. Epub 2011 Oct 17. Review.
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30.RNAi promotes heterochromatic silencing through replication-coupled release of RNA Pol II.
Zaratiegui M, Castel SE, Irvine DV, Kloc A, Ren J, Li F, de Castro E, Marín L, Chang AY, Goto D, Cande WZ, Antequera F, Arcangioli B, Martienssen RA.
Nature. 2011 Oct 16;479(7371):135-8. doi: 10.1038/nature10501.
PMID: 22002604 [PubMed - indexed for MEDLINE]

31.A novel disrupter of telomere silencing 1-like (DOT1L) interaction is required for signal transducer and activator of transcription 1 (STAT1)-activated gene expression.
Shah S, Henriksen MA.
J Biol Chem. 2011 Dec 2;286(48):41195-204. Epub 2011 Oct 15.
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32.Interaction of Sororin protein with polo-like kinase 1 mediates resolution of chromosomal arm cohesion.
Zhang N, Panigrahi AK, Mao Q, Pati D.
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33.The stability of histone acetyltransferase general control non-derepressible (Gcn) 5 is regulated by Cullin4-RING E3 ubiquitin ligase.
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34.Role of the PWWP domain of lens epithelium-derived growth factor (LEDGF)/p75 cofactor in lentiviral integration targeting.
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35.Structure and nucleosome interaction of the yeast NuA4 and Piccolo-NuA4 histone acetyltransferase complexes.
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36.Oligomerization of DNMT3A controls the mechanism of de novo DNA methylation.
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37.Human oocytes reprogram somatic cells to a pluripotent state.
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38.Histone chaperone FACT coordinates nucleosome interaction through multiple synergistic binding events.
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39.CTCF-promoted RNA polymerase II pausing links DNA methylation to splicing.
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40.The Cutoff protein regulates piRNA cluster expression and piRNA production in the Drosophila germline.
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41.Release of Ku and MRN from DNA ends by Mre11 nuclease activity and Ctp1 is required for homologous recombination repair of double-strand breaks.
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42.Structural and evolutionary basis for the dual substrate selectivity of human KDM4 histone demethylase family.
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43.Cdk1 uncouples CtIP-dependent resection and Rad51 filament formation during M-phase double-strand break repair.
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44.Genome-wide analysis distinguishes hyperglycemia regulated epigenetic signatures of primary vascular cells.
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45.Epigenetic displacement of HP1 from heterochromatin by HIV-1 Vpr causes premature sister chromatid separation.
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46.DNA methylation profiles of human active and inactive X chromosomes.
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47.Sir2 histone deacetylase prevents programmed cell death caused by sustained activation of the Hog1 stress-activated protein kinase.
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48.RNAi screen identifies Brd4 as a therapeutic target in acute myeloid leukaemia.
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49.Hyphal development in Candida albicans requires two temporally linked changes in promoter chromatin for initiation and maintenance.
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50.Dynamics of the epigenetic landscape during erythroid differentiation after GATA1 restoration.
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51.Large-scale methylation domains mark a functional subset of neuronally expressed genes.
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52.Application of microdroplet PCR for large-scale targeted bisulfite sequencing.
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53.Functional involvement of dual specificity phosphatase 16 (DUSP16), a c-Jun N-terminal kinase-specific phosphatase, in the regulation of T helper cell differentiation.
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54.Transcription factors KLF1 and KLF2 positively regulate embryonic and fetal beta-globin genes through direct promoter binding.
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55.Tissue-specific distribution and dynamic changes of 5-hydroxymethylcytosine in mammalian genomes.
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56.Autoacetylation of the histone acetyltransferase Rtt109.
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57.Aberrant epigenetic and genetic marks are seen in myelodysplastic leukocytes and reveal Dock4 as a candidate pathogenic gene on chromosome 7q.
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58.Genome-wide assessment of imprinted expression in human cells.
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1.The genetic basis of early T-cell precursor acute lymphoblastic leukaemia.
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2.Epigenetic regulation of hypoxic sensing disrupts cardiorespiratory homeostasis.
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3.Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development.
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6.Symmetric dimethylation of H3R2 is a newly identified histone mark that supports euchromatin maintenance.
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8.Human histone acetyltransferase HAT1 preferentially acetylates H4 molecules in H3.1-H4 dimers over H3.3-H4 dimers.
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9.Decapping of Long Noncoding RNAs Regulates Inducible Genes.
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10.Compensatory functions of histone deacetylase 1 (HDAC1) and HDAC2 regulate transcription and apoptosis during mouse oocyte development.
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11.Intronic promoter drives the BORIS-regulated expression of FerT in colon carcinoma cells.
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12.Histone deacetylase 1 enhances microRNA processing via deacetylation of DGCR8.
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13.Trithorax group proteins: switching genes on and keeping them active.
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14.Selective repression of MEF2 activity by PKA-dependent proteolysis of HDAC4.
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15.Phosphorylation at serine 331 is required for Aurora B activation.
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16.Deletion of the de novo DNA methyltransferase Dnmt3a promotes lung tumor progression.
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17.Transcriptome analysis of the Arabidopsis megaspore mother cell uncovers the importance of RNA helicases for plant germline development.
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18.Binding of the JmjC demethylase JARID1B to LSD1/NuRD suppresses angiogenesis and metastasis in breast cancer cells by repressing chemokine CCL14.
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19.SIRT1 is essential for oncogenic signaling by estrogen/estrogen receptor α in breast cancer.
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20.HDAC4 protein regulates HIF1α protein lysine acetylation and cancer cell response to hypoxia.
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21.Verticillin A overcomes apoptosis resistance in human colon carcinoma through DNA methylation-dependent upregulation of BNIP3.
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22.Caenorhabditis elegans histone methyltransferase MET-2 shields the male X chromosome from checkpoint machinery and mediates meiotic sex chromosome inactivation.
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23.An iterative genetic and dynamical modelling approach identifies novel features of the gene regulatory network underlying melanocyte development.
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24.A pre-mRNA-associating factor links endogenous siRNAs to chromatin regulation.
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25.Definition of a FoxA1 Cistrome that is crucial for G1 to S-phase cell-cycle transit in castration-resistant prostate cancer.
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26.Structure of human SMYD2 protein reveals the basis of p53 tumor suppressor methylation.
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27.Condensins I and II are essential for construction of bivalent chromosomes in mouse oocytes.
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28.Crystal structure of the N-terminal region of human Ash2L shows a winged-helix motif involved in DNA binding.
Chen Y, Wan B, Wang KC, Cao F, Yang Y, Protacio A, Dou Y, Chang HY, Lei M.
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